Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_021806.1 Length=100418 Score E Sequences producing significant alignments: (Bits) Value seq2963 111 1e-19 seq44239 93.3 3e-14 seq13237 84.2 1e-11 >seq2963 Length=134402 Score = 111 bits (122), Expect = 1e-19 Identities = 180/252 (71%), Gaps = 9/252 (4%) Strand=Plus/Minus Query 96156 CTGAGCTAATACTGTAGCTGTGGTTGTTCCATCTCCTACTTCTGTATTAGTATTCTCAGC 96215 ||| || ||||| || ||||| || || ||||| ||| ||| | ||| || ||| Sbjct 45605 CTGTGCCAATACAGTTGCTGTAGTGGTACCATCACCTGCTTGATCAGCAGTTTTTGAAGC 45546 Query 96216 TACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTCTCT 96275 ||||| ||||| |||||||||||| | |||||| |||||||||| |||| |||||| | Sbjct 45545 TACTTCTTTAACCATTTGAGCACCCATGTTTTCCAATGGATCTTTCAAATCGATTTCTTT 45486 Query 96276 AGCCACACTTACACCATCTTTAGTAA-TGAT--TGGATTATA-CTGGTCTAAACCTAGTA 96331 || ||| ||||||||||| |||| || | || | | | | ||| || || | Sbjct 45485 CGCAACAGAAACACCATCTTTTGTAATTGCTGGTGAACCAAATTTCTTCTCAA--TA--A 45430 Query 96332 TAACATTCTTACCTGATGGTCCTAGAGTTACTTTAACTGCATTAGCTAAAGCATCTACAC 96391 | ||||| |||| || |||| |||||||| || ||||| || || | ||| |||| Sbjct 45429 TTACATTACGACCTTTAGGACCTAATGTTACTTTTACGGCATTCGCCAATGTATCAACAC 45370 Query 96392 CTCTCTTTAAGG 96403 | || ||| ||| Sbjct 45369 C-CTTTTTCAGG 45359 >seq44239 Length=9401 Score = 93.3 bits (102), Expect = 3e-14 Identities = 176/258 (68%), Gaps = 12/258 (5%) Strand=Plus/Plus Query 96130 GCTTTAAAGCCTTCTTCTAGAATTTTCTGAGCTAATACTGTAGCTGTGGTTGTTCCATCT 96189 ||||| |||||||| | || || || ||||||||||| || || ||||| || || Sbjct 1469 GCTTTTAAGCCTTCGTTTACGATAGCTTGCGCTAATACTGTTGCAGTTGTTGTACCGTCA 1528 Query 96190 CCTACTTCTGTATTAGTATTCTCAGCTACTTGTTTAATCATTTGAGCACCTAAGTTTTCA 96249 ||| | | ||| | || ||||||| ||||| ||||||||| || | |||||| Sbjct 1529 CCTGCAGCGTCATTCGCTTTAGACGCTACTTCTTTAACCATTTGAGCGCCCATGTTTTCG 1588 Query 96250 AATGGATCTTCTAAATGAATTTCTCTAGCCACACTTACACCATCTTTAGTAATGATTGGA 96309 || ||||| | | |||||| | || ||| ||||||||||||||| || | |||| Sbjct 1589 AACTTGTCTTCAAGCTCGATTTCTTTTGCAACAGATACACCATCTTTAGTGATCACTGGA 1648 Query 96310 -----TTAT-ACTGGTCTAAACCTAGTATAACATTCTTACCTGATGGTCCTAGAGTTACT 96363 || | | |||||| || ||| || ||| || |||| ||||||| Sbjct 1649 GCGCCGAATGATTTGTCTAA------TACAACGTTACGGCCTTTAGGACCTAAAGTTACT 1702 Query 96364 TTAACTGCATTAGCTAAA 96381 || ||||| || |||||| Sbjct 1703 TTTACTGCGTTTGCTAAA 1720 >seq13237 Length=46180 Score = 84.2 bits (92), Expect = 1e-11 Identities = 108/148 (73%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 96155 TCTGAGCTAATACTGTAGCTGTGGTTGTTCCATCTCCTACTTCTGTATTAGTATTCTCAG 96214 |||| |||||||| || ||||| || || |||||||| ||||| ||||||||| | || Sbjct 29783 TCTG-GCTAATACAGTTGCTGTAGTAGTACCATCTCCGGCTTCTTCATTAGTATTATTAG 29841 Query 96215 CTACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTCTC 96274 | || | || || | | ||||| | |||| |||| ||||| ||| | || || Sbjct 29842 CAACATCTTGAACTAGCTTGGCACCGATATTTTGAAATTTATCTTTTAACTCTATAGCTT 29901 Query 96275 TAGCCACACTTACACCATCTTTAGTAAT 96302 | ||||| | ||||||||||| ||||| Sbjct 29902 TTGCCACTGTAACACCATCTTTGGTAAT 29929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 320507215531684