Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20]
180,236 sequences; 2,439,301,466 total letters
Query= NC_021806.1
Length=100418
Score E
Sequences producing significant alignments: (Bits) Value
seq2963 111 1e-19
seq44239 93.3 3e-14
seq13237 84.2 1e-11
>seq2963
Length=134402
Score = 111 bits (122), Expect = 1e-19
Identities = 180/252 (71%), Gaps = 9/252 (4%)
Strand=Plus/Minus
Query 96156 CTGAGCTAATACTGTAGCTGTGGTTGTTCCATCTCCTACTTCTGTATTAGTATTCTCAGC 96215
||| || ||||| || ||||| || || ||||| ||| ||| | ||| || |||
Sbjct 45605 CTGTGCCAATACAGTTGCTGTAGTGGTACCATCACCTGCTTGATCAGCAGTTTTTGAAGC 45546
Query 96216 TACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTCTCT 96275
||||| ||||| |||||||||||| | |||||| |||||||||| |||| |||||| |
Sbjct 45545 TACTTCTTTAACCATTTGAGCACCCATGTTTTCCAATGGATCTTTCAAATCGATTTCTTT 45486
Query 96276 AGCCACACTTACACCATCTTTAGTAA-TGAT--TGGATTATA-CTGGTCTAAACCTAGTA 96331
|| ||| ||||||||||| |||| || | || | | | | ||| || || |
Sbjct 45485 CGCAACAGAAACACCATCTTTTGTAATTGCTGGTGAACCAAATTTCTTCTCAA--TA--A 45430
Query 96332 TAACATTCTTACCTGATGGTCCTAGAGTTACTTTAACTGCATTAGCTAAAGCATCTACAC 96391
| ||||| |||| || |||| |||||||| || ||||| || || | ||| ||||
Sbjct 45429 TTACATTACGACCTTTAGGACCTAATGTTACTTTTACGGCATTCGCCAATGTATCAACAC 45370
Query 96392 CTCTCTTTAAGG 96403
| || ||| |||
Sbjct 45369 C-CTTTTTCAGG 45359
>seq44239
Length=9401
Score = 93.3 bits (102), Expect = 3e-14
Identities = 176/258 (68%), Gaps = 12/258 (5%)
Strand=Plus/Plus
Query 96130 GCTTTAAAGCCTTCTTCTAGAATTTTCTGAGCTAATACTGTAGCTGTGGTTGTTCCATCT 96189
||||| |||||||| | || || || ||||||||||| || || ||||| || ||
Sbjct 1469 GCTTTTAAGCCTTCGTTTACGATAGCTTGCGCTAATACTGTTGCAGTTGTTGTACCGTCA 1528
Query 96190 CCTACTTCTGTATTAGTATTCTCAGCTACTTGTTTAATCATTTGAGCACCTAAGTTTTCA 96249
||| | | ||| | || ||||||| ||||| ||||||||| || | ||||||
Sbjct 1529 CCTGCAGCGTCATTCGCTTTAGACGCTACTTCTTTAACCATTTGAGCGCCCATGTTTTCG 1588
Query 96250 AATGGATCTTCTAAATGAATTTCTCTAGCCACACTTACACCATCTTTAGTAATGATTGGA 96309
|| ||||| | | |||||| | || ||| ||||||||||||||| || | ||||
Sbjct 1589 AACTTGTCTTCAAGCTCGATTTCTTTTGCAACAGATACACCATCTTTAGTGATCACTGGA 1648
Query 96310 -----TTAT-ACTGGTCTAAACCTAGTATAACATTCTTACCTGATGGTCCTAGAGTTACT 96363
|| | | |||||| || ||| || ||| || |||| |||||||
Sbjct 1649 GCGCCGAATGATTTGTCTAA------TACAACGTTACGGCCTTTAGGACCTAAAGTTACT 1702
Query 96364 TTAACTGCATTAGCTAAA 96381
|| ||||| || ||||||
Sbjct 1703 TTTACTGCGTTTGCTAAA 1720
>seq13237
Length=46180
Score = 84.2 bits (92), Expect = 1e-11
Identities = 108/148 (73%), Gaps = 1/148 (1%)
Strand=Plus/Plus
Query 96155 TCTGAGCTAATACTGTAGCTGTGGTTGTTCCATCTCCTACTTCTGTATTAGTATTCTCAG 96214
|||| |||||||| || ||||| || || |||||||| ||||| ||||||||| | ||
Sbjct 29783 TCTG-GCTAATACAGTTGCTGTAGTAGTACCATCTCCGGCTTCTTCATTAGTATTATTAG 29841
Query 96215 CTACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTCTC 96274
| || | || || | | ||||| | |||| |||| ||||| ||| | || ||
Sbjct 29842 CAACATCTTGAACTAGCTTGGCACCGATATTTTGAAATTTATCTTTTAACTCTATAGCTT 29901
Query 96275 TAGCCACACTTACACCATCTTTAGTAAT 96302
| ||||| | ||||||||||| |||||
Sbjct 29902 TTGCCACTGTAACACCATCTTTGGTAAT 29929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 320507215531684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |