Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq4461 127 5e-25 seq11269 114 3e-21 seq737 86.0 2e-12 >seq4461 Length=107335 Score = 127 bits (140), Expect = 5e-25 Identities = 253/366 (69%), Gaps = 9/366 (2%) Strand=Plus/Minus Query 39262 GTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCT 39321 ||| ||||| ||||| |||||| ||||| || | ||| | || ||||| || Sbjct 32842 GTAGCCCACGTTCGGCACCCATTCCGATTTCAGGCTGCGGAACAGCCGCTCCATCGGCGA 32783 Query 39322 GTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAA 39381 ||| ||||||||||| || || || ||||| || || |||| |||| ||||||| Sbjct 32782 GTTGTCCCAGCAGTTGCCACGACGACTCATGCTTTGCTCGATCCGGTAGCGCCACAGGCG 32723 Query 39382 CTGCCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCA-CCCCG 39440 ||| |||||||| || ||||| ||| |||| ||||||||| ||||||||||| ||| Sbjct 32722 CTG-CCGGAACTTCCGGCTCGCATACTGACCGCCCTGATCAGAGTGGAACATCAGGCCCT 32664 Query 39441 CCGGGCTTACCACGGGTTTCCCAT--GCCATTTCCAGCGCTTTCATGGTGAG-CCTGCTG 39497 ||| | || || ||| | ||| ||||| |||||||| | || || | || | Sbjct 32663 GCGGAC-GAC--CGCGTTGCTCATAGGCCATGTCCAGCGCCTGCACCACCAGATCAGC-G 32608 Query 39498 TCCGGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACG 39557 || ||| | ||| | ||||||||||| || | |||||| || || || | Sbjct 32607 TCTGGCCTGGTCGAGAACGCCCAGCCCACGACCCGTCGCGTGAACAGATCCAGCACCGCC 32548 Query 39558 GCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGA 39617 || ||||| |||||| | | ||||| ||||| | || |||||||| |||||| Sbjct 32547 GCCAGGTAATGCCAGCGGCCCTCTGCCCAGACGTAGGTGATGTCGCCGCACCAGACCTGA 32488 Query 39618 TTTGGC 39623 || ||| Sbjct 32487 TTGGGC 32482 >seq11269 Length=54388 Score = 114 bits (126), Expect = 3e-21 Identities = 418/645 (65%), Gaps = 41/645 (6%) Strand=Plus/Plus Query 902 TTTGGCTGGGTCAATAAAGGCTCCCGGCTGCGCCGCTTCCGTGAGGTGTATACCGAAATC 961 |||||||||||||| || | | || | |||| | ||||| |||| || || || Sbjct 12857 TTTGGCTGGGTCAAGAAGGACACCGGCAAGCGCAGGTTCCGCGAGGCCTACGAAGAGATT 12916 Query 962 CCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGTGTCGCCCTGTATTGTTTTGCCTGT 1021 ||| | |||||||| |||||||| | ||| | | | || | || ||| Sbjct 12917 CCCAGGAAGAACGGGAAATCGGCCCGCCTTGCTGCACGAGGTATTTACTTGTTCGCCGCA 12976 Query 1022 GATAACGAGTTTGGCGCGGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTGGGAA 1081 ||| ||||| || || || || |||||||| ||||| || ||||| ||||||| || Sbjct 12977 GATGGCGAGTCGGGAGCCGAGGTCTATTCCGGCGCCACCACCGAGAAGCAGGCGTTCGAG 13036 Query 1082 GTCTTTCGCCCGGCTCGACTGATGTGTAA-ACGC---ACACCCATGCTGACGGAAGCG-T 1136 || |||||||||||| | ||||| | | | || | | || || || || || | Sbjct 13037 GTATTTCGCCCGGCTTGGATGATGGCTCACAAGCTGGAGAACC----TG-CGCAACCGGT 13091 Query 1137 TCGGGATTGAGGTTAACGCCTCAAACATGAACCGT----CC-----------GGAGGATG 1181 |||| || ||| || | | | ||||| | || |||||| Sbjct 13092 TCGGCATCGAGCTTTCTGGAAATCAGAAGAACCCTGGCCCCATGTTCGTCATGGAGGACA 13151 Query 1182 GCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTGATGGTTCATCACCCCACTGTGCGG 1241 || ||| || || ||||||| |||||||| |||||| | ||||| ||| Sbjct 13152 TGTCGAAGTTCGAGACGGTGATCGGCAACCCCGGGGATGGTGCGAGTCCCCATGCTGCCC 13211 Query 1242 TGGTGGATGAATATCACGAGCATGCCACCGATGC---GCTTTATACCACAATGCTTACCG 1298 ||||||| || || ||||| || | ||| || || | | |||||| ||| || | Sbjct 13212 TGGTGGACGAGTACCACGAACACGACACAGACGCCTTGGTGGATACCA---TGCAGACAG 13268 Query 1299 GGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGGGTACAACATTG 1358 | |||||||||||| |||||| || ||| | ||| || || | |||| || | | Sbjct 13269 GCATGGGGGCGCGAGAACAGCCATTGCTGTCGATCATTACGACGTCGGGGTCAAATCTCG 13328 Query 1359 AGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCTA 1418 |||||| || ||||| || || ||||| || ||| || ||| | || | | | | Sbjct 13329 GGGGGCCATGTTACGAGAAGCGCCGGGACGTGATCCGCATTCTCGAGGG---GCAGACGA 13385 Query 1419 ACGATGA-AC--TGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACC 1475 |||||| || | |||||||||||||| || | || || | ||| ||| |||| Sbjct 13386 TCGATGAGACGATCTTCGGGATCATCTACACGATCGACGAGGATGATTCGTGGGATGACC 13445 Query 1476 CG--CAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGT 1518 || ||| ||| || |||||||| ||| || |||||||| Sbjct 13446 CGGCCAG--CCTGATCAAGGCCAATCCGAATTACGGAGTGTCGGT 13488 >seq737 Length=236300 Score = 86.0 bits (94), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 39262 GTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCT 39321 ||||||||| ||||| | |||| |||||||| | ||| | || ||||| || Sbjct 90743 GTAACCCACACTCGGCACCAATTCCGATTTCAGACTGCGGAACAGCCGCTCCATCGGCGA 90802 Query 39322 GTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAA 39381 ||| |||||| |||| ||||| || || || ||||| |||| |||| || |||| Sbjct 90803 GTTGTCCCAGAAGTTGCCGCGACGACTTATGCTCTGCGCGATCCGGTAGCGTCACAGGCG 90862 Query 39382 CTGCCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCA 39435 | ||| |||||| || || | ||| || | |||||||| ||||||||||| Sbjct 90863 CGGCC-GGAACTTCCGGCATGCATATTGCCCACCCTGATCCGAGTGGAACATCA 90915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132314599312984