Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 136 5e-26 seq469 116 5e-20 >seq4 Length=924746 Score = 136 bits (150), Expect = 5e-26 Identities = 333/493 (68%), Gaps = 19/493 (4%) Strand=Plus/Minus Query 1726581 AGTTGGGCCGGCCGGGCGAC-CCGCGCAGCACAATGTGCCCGTCGGCGTTGCCGGCGCTG 1726639 |||||||| |||| || | ||||||||||| | || |||| | |||||||| | || Sbjct 683736 AGTTGGGCTTGCCGT-CGCCGCCGCGCAGCACGACATGGCCGTAGCGGTTGCCGGTGGTG 683678 Query 1726640 TGGCAGGGGGCCGCGCGC---CCGTCGCCGTCCAGCCATAGAAAGGTATGCGGCTGGGCG 1726696 | | | ||||| | |||||| |||| | | || ||| | ||||| | Sbjct 683677 TTGATGA---CCGCGACCTTGCCGTCGGCGTCGATGCCGAGGAAGCTGTGCGGGTTCTGC 683621 Query 1726697 GCGGCGCGCACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCGTTCTTGAAGCCG 1726756 | | | ||| ||||| | ||| | | || ||||||||||||||||||||||| Sbjct 683620 ACCGAGAGCAGGGCGTTGGTGGCCACCTTGAGGCCGCCGTCGGTGCCGTTCTTGAAGCCC 683561 Query 1726757 ATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCGCGCG 1726816 | | | || ||| |||||| ||| ||||||||| ||| || || ||||||||| Sbjct 683560 ACCGGCGACGACAGGCCCGACGACATTTCGCGGTGCGTCTGCGATTCCGTGGTGCGCGCG 683501 Query 1726817 CCCACGGCGCCCCACGCCACCAGGTC-TGCCAAATAAGGGGCCACCAGAGGACTGAGAAA 1726875 || | || ||| || | |||||| ||| | | ||| || | || | ||| Sbjct 683500 CCGATCGCCGACCAGGCGATCAGGTCGTGCAGGAACTGCGGCGACATGGGGTC-GAGCGC 683442 Query 1726876 CTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAG---GCGGCGCGA 1726932 ||| ||| |||| | ||| || || ||| ||| ||| ||| ||||| ||| Sbjct 683441 TTCGGTGGCGCAGGGCAGGCCGA--GCT-CGTTGAGTTCGAGCAGCAGCTTGCGGC-CGA 683386 Query 1726933 CGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCC 1726992 || ||||||||| | ||| |||| | || | || |||||| || |||||| Sbjct 683385 TGCG--CAGGCCGTCCTGGATACGGAACGAATCATCCATGTACGGGTCGTTGATCAGGCC 683328 Query 1726993 CTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCAAAGCGC 1727052 |||||| || ||||| ||||||||||| |||| ||| |||||||||||| | | |||| Sbjct 683327 CTTCCAGCCCACGGTGGTGCGCGGCTTCTCGAAATACACGCGCATGACCAGGTACAGCGT 683268 Query 1727053 GTCGCCGACCTCG 1727065 ||||| ||| ||| Sbjct 683267 GTCGCTGACTTCG 683255 Score = 122 bits (134), Expect = 1e-21 Identities = 267/393 (68%), Gaps = 8/393 (2%) Strand=Plus/Minus Query 18088 GTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGC-ATCATCGACGGCGTGCC 18146 ||||||||| ||||||||||||||| ||| || | | || ||| |||| |||||||| Sbjct 778937 GTCACCACCGCGGGCGAGTCGCACGGGCCGG-CGCTGACCGCCATCGTCGATGGCGTGCC 778879 Query 18147 GCCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGG 18206 |||| |||| | ||| ||||||||||| | ||| | | || || ||| ||||| Sbjct 778878 GCCGGGCATCGCGCTGACCGAGGCCGACCTGCAGGTCGATCTCGACCGCCGCAAGCCGGG 778819 Query 18207 CCAGGGCGCACTTT-CCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCA 18265 | | | || || |||| | |||||| || || ||||| |||| || ||| Sbjct 778818 C-ACGTCGTCGTTCGCCACCCAGCGCAAGGAAGAGGACATCGTCAGGATCCTCTCCGGCG 778760 Query 18266 CGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGC 18325 | | ||| ||| |||| |||| ||| || | | | ||| |||||||| Sbjct 778759 TGTTCGAGGGCAGGACGACCGGCACGCCGATCGCGCTGCTGATCGAGAACACCGACCAGC 778700 Query 18326 GGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCT 18385 | || ||||| | |||| | || ||||| |||| ||||||||||||| Sbjct 778699 GCTCCAAGGACTACGGCAACATCGCCGAGACCTTCCGGCCGGCACATGCCGACTACACCT 778640 Query 18386 ACATGGCCAAGTACGGCATCAAGGCGTCGTCGG--GCGGAGGCCGGTCGTCTGCCCGCGA 18443 ||| | |||||||||| || ||| | | | |||| ||||| || || ||||| Sbjct 778639 ACACGCACAAGTACGGCTTCC--GCGACTACCGCGGCGGCGGCCGTTCCAGCGCGCGCGA 778582 Query 18444 GACCCTCATGCGCGTCGCCGCCGGCGCGGTCGC 18476 |||| ||||||||| |||||||||||| |||| Sbjct 778581 GACCGCCATGCGCGTGGCCGCCGGCGCGATCGC 778549 Score = 104 bits (114), Expect = 3e-16 Identities = 226/334 (68%), Gaps = 12/334 (4%) Strand=Plus/Minus Query 92601 TCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACG 92660 || |||||||| || ||| |||||| | ||| | |||| | |||||||| || Sbjct 781415 TCCGCGATCTGCTTGGTCAGGTTCTCCTGGATCTGCAGGCGGCGCGCGTACATGTCGGCG 781356 Query 92661 ATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCC 92720 ||||||| || |||| ||| || | | | |||| | || | |||| ||||||| || Sbjct 781355 ATGCGCGCGACCTTGGACAGTCCCAGCACCTTGCCGGACGGGATGTAGGCCACGTGCACC 781296 Query 92721 TTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACG 92780 ||||| || ||||||||||| ||||||||||||| || | | |||| ||| || Sbjct 781295 TTGCCGATGAAGGGCAGCAGGTGGTGCTCGCACAGCGAATACAGCTCGATGTCCTTGACC 781236 Query 92781 ATCACCATCTCGCCCGAGGCCTCGGCAAAGAGCGC---GTCGCCGATGGCCTCGGCCAGC 92837 | |||||||| | | | || | |||| || || | ||||| | ||| || Sbjct 781235 AGCACCATCTGGTCGTTGTCCGACGGGAAGATGGCATTGTTGACGATGACGTCG---AG- 781180 Query 92838 GTCATGCGGTGGCCGCGCGTGC---GCTCCACCATGGCCTTGGCCACGCGCATCGGCGTG 92894 ||| | | | | || | ||| | | | | ||||||||| ||||| | |||||| Sbjct 781179 GTCTTCC--TCGTAGCCCTTGCACAGGTACTTGAAGGCCTTGGCGGCGCGCTTGGGCGTG 781122 Query 92895 TCCAGGAGGCCCTCGCGCCGCACGTCCTCGCCCA 92928 ||||| ||||| ||| || ||||||||||| Sbjct 781121 TCCAGCAGGCCGGGGCGGTCCAGGTCCTCGCCCA 781088 >seq469 Length=271783 Score = 116 bits (128), Expect = 5e-20 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || |||||||| |||| | || ||||||||||| || |||||| ||| | ||| || Sbjct 10529 ACACTCTTTGAACTGATTTTGGCTGCCAACTACCTTGATATCAAGGGTCTTTTAGATGTT 10588 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 |||||| | || |||||||||||||| |||||| | ||||| |||||||||||||| Sbjct 10589 ACTTGCAAGACGGTAGCCAACATGATCAAAGGCAAGACTCCCGAAGAGATCCGCAAGACA 10648 Query 1592285 TTTAACATCAAG 1592296 || ||||||||| Sbjct 10649 TTCAACATCAAG 10660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6092348189794812