Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2234 109 5e-19 >seq2234 Length=154088 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| |||| ||||||||||| ||| | ||| |||||| Sbjct 11422 ATGCAAATTTTCGTGAAAACCCTAACTGGCAAAACCATCACCTTGGAAGTAGAGCCTAGT 11481 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| ||||||||||| | ||| |||||| Sbjct 11482 GACACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCAGATCAA 11541 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| ||| ||||| ||| |||| |||| | || | | ||||||||| Sbjct 11542 CAGAGGCTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAAC 11601 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || |||||||||||||| || || Sbjct 11602 ATCCAAAAAGAATCTACATTACA 11624 Score = 107 bits (118), Expect = 2e-18 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 110264 AGATTTA--AAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA 110321 ||||||| ||||||| || ||||| |||||| | |||||||| ||||| || | || Sbjct 10499 AGATTTACAAAATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATCACTCTAGAGG 10558 Query 110322 CGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGC 110381 |||||| ||||| | | | ||||| |||||| ||||||||||| | | Sbjct 10559 TTGAGCCTAGTGATACCATTGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGAATTC 10618 Query 110382 CCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGG 110441 | ||||||||| || | || | ||| || ||||| |||| |||| ||||| | Sbjct 10619 CTCCAGATCAACAACGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTCT 10678 Query 110442 CGGATTACAACATTCAAAAAGAATCTAC 110469 |||| |||||||||||||| ||||| || Sbjct 10679 CGGACTACAACATTCAAAAGGAATCCAC 10706 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| |||| || ||||| ||||| | ||| || || Sbjct 11878 ATGCAAATTTTTGTAAAGACTCTAACAGGTAAAACAATTACATTAGAAGTCGAACCAAGT 11937 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || || ||||||||||| | ||| ||||| Sbjct 11938 GATACCATTGAAAATGTTAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 11997 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| ||| ||||| || || || |||| | | || || ||||||| ||| Sbjct 11998 CAGCGTTTAATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTGTCGGATTATAAC 12057 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||||||||| |||| |||| |||||||| |||| || Sbjct 12058 ATTCAAAAAGAATCTACTCTGCATCTGGTTTTAAGACTCAGAGGAGG 12104 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| | || || || ||||| ||| | ||| || || | Sbjct 12106 ATGCAAATTTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAAGTAGAACCAAGC 12165 Query 110333 GATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || |||||| || ||| || ||||||||| | || ||||| Sbjct 12166 GATACAATTGAAAATGTCAAAACAAAA-ATTCAAGATAAAGAAGGCATTCCACCAGATCA 12224 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| || |||| ||| ||||||||||| || |||| | || || |||||||||| Sbjct 12225 GCAAAGGCTGATTTTTGCTGGTAAACAGCTTGAAGATGGGCGTACCCTGTCGGATTACAA 12284 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| |||||||| ||||| Sbjct 12285 CATCCAAAAAGAGTCTAC 12302 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||||||||||||||| || || || ||||| ||| | |||| || ||| | Sbjct 11194 ATGCAAATATTTGTCAAAACTTTGACAGGGAAGACCATAACCTTAGAAAGTGAACCTAGC 11253 Query 110333 GATACTGTCGGCCAGGTAAA-ACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || || ||| || || || |||||||| | ||| || || Sbjct 11254 GACACAATAGAAAATGTCAAGACAAAA-ATCCAAGATAAAGAAGGTATTCCCCCAGACCA 11312 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | |||| ||| ||||| || || || |||| | | || | |||| ||||| Sbjct 11313 ACAGCGTTTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTATCGGACTACAA 11372 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| ||||||||||| Sbjct 11373 CATTCAGAAAGAATCTAC 11390 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| | || ||||||||||| ||| | ||| || ||| Sbjct 12646 ATGCAAATTTTTGTTAAAACCCTGACTGGCAAAACCATCACCTTAGAAGTTGAACCTAGT 12705 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || || || |||||||| | ||| ||||| Sbjct 12706 GATACAATTGAGAATGTGAAAGCCAAAATCCAGGATAAAGAAGGTATTCCCCCAGATCAG 12765 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| |||||||| || || |||| |||||| || | ||||| || Sbjct 12766 CAGAGGTTAATCTTTGCTGGTAAACAACTTGAAGATGGCAGAACTTTGTCAGATTATAAT 12825 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || |||||||| | ||| |||| | || || |||| || Sbjct 12826 ATCCAGAAGGAATCTACTCTACACTTGGTTCTCAGGTTGAGAGGAGG 12872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | || || |||||||| || | ||| ||||||| Sbjct 10738 ATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACCATCACTCTTGAAGTGGAGCCTAGT 10797 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || |||||| || ||||| || | || ||||| Sbjct 10798 GACACAATCGAAAATGTGAAGGCCAAGATTCAAGATAAAGAGGGTATCCCACCAGATCAG 10857 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||| || |||| | | || | | |||||||| Sbjct 10858 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGTACTCTTTCAGATTACAAT 10917 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || ||||||||||| || | ||| |||| | ||||| |||| |||| Sbjct 10918 ATCCAAAAAGAATCCACTCTTCACCTGGTTCTCCGACTGAGAGGAGGAA 10966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411934741304348