Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_022066.1 Length=108297 Score E Sequences producing significant alignments: (Bits) Value seq4 138 8e-28 seq15036 86.0 4e-12 seq68 84.2 2e-11 >seq4 Length=924746 Score = 138 bits (152), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 95167 GGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGG 95226 |||||||||| ||||| ||||| |||| |||||||| ||||| |||||||||||||| Sbjct 542435 GGCACGTTGGCCTTGATCAGGCCGGTGATGACATCCACCGAGGGACGCTGCGTCGCCAGC 542494 Query 95227 ACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACT 95286 ||||| || || ||||| |||||||||||||| ||||||||| | || |||| | Sbjct 542495 ACGAGGTGGATGCCGGCGGCGCGCGCCTTCTGCGCGATGCGGGCGATCAGCTCCTCCA-- 542552 Query 95287 TCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAG 95346 | |||||| | || ||| || | ||| |||| |||||||| | ||||||||| | Sbjct 542553 -CCTTCTTGCCGACGATCATGATCATGTCGGCGAATTCGTCGATAATGACCACGATGAAC 542611 Query 95347 GGGAG 95351 || || Sbjct 542612 GGCAG 542616 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 95455 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATC 95514 ||||||||||||||| || ||||| || || || ||| | || |||| |||| Sbjct 542822 TCGGTGACCACCGGCGTCAGCAGGTGCGGAATCTTGTCGTAGACCGACAGCTCCAGCATC 542881 Query 95515 TTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACC 95574 || |||||||||||||| || | | | || |||| | | |||||||| | Sbjct 542882 TTGGGGTCGATCATGATCAGGCGCAGCTCGGCCGGCGTGGCCTTGAACAGCATGGACAGG 542941 Query 95575 AGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGG 95634 | ||| | ||||| | ||||||||||| ||||||| ||| || |||||||||||| Sbjct 542942 ATCATGGCGTTGACGCCCACCGACTTGCCCGAACCGGTGGTGCCGGCGACCAGCAGGTGG 543001 Query 95635 GGCATTTTGGCCAGGT 95650 ||||| ||||||| Sbjct 543002 GGCATGCGTGCCAGGT 543017 >seq15036 Length=40235 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 6432 CCGCCGCACATGATCGGCGATACGGAAAAGTCCACCTCCTGGGGCACGGGCATTGAGCAG 6491 || || |||||||||||||| ||||| || ||| | ||||||||||||||||||||||| Sbjct 16065 CCACCTCACATGATCGGCGAGACGGAGAAAACCAGCGCCTGGGGCACGGGCATTGAGCAG 16006 Query 6492 CAATCCATCGGATTCGT 6508 |||||||| ||||| Sbjct 16005 ATGTCCATCGGTTTCGT 15989 >seq68 Length=444459 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/172 (72%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 95179 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATA 95238 ||||| ||| |||| || || || || |||||||||||||||| || ||| || || Sbjct 286687 TTGATCGTGCCGGTGATGACGTCGACCGAAGGCCGCTGCGTCGCCATGATGAGGTGGATG 286746 Query 95239 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 95298 || | || |||||| |||| || | || ||| ||||||| |||||| | | Sbjct 286747 CCCGAGGCCCGCGCCATCTGCGCAAGACGCTGGATGCAAGCCTCGATCTCTTTCCCG--G 286804 Query 95299 CCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGGA 95350 || ||||||| ||||| || | |||||||| | || ||||| ||||||| Sbjct 286805 CC-ACCATCATCAGGTCGGCCATCTCGTCGACGATGACGACGATATAGGGGA 286855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345664632433368