Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_022067.1 Length=109960 Score E Sequences producing significant alignments: (Bits) Value seq4 134 1e-26 seq68 96.9 2e-15 seq15036 86.0 4e-12 >seq4 Length=924746 Score = 134 bits (148), Expect = 1e-26 Identities = 141/185 (76%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 95672 GGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGG 95731 |||||||||| ||||| ||||| |||| |||||||| ||||| |||||||||||||| Sbjct 542435 GGCACGTTGGCCTTGATCAGGCCGGTGATGACATCCACCGAGGGACGCTGCGTCGCCAGC 542494 Query 95732 ACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACT 95791 ||||| || |||||||| |||||||||||||| ||||||||| | || |||| | Sbjct 542495 ACGAGGTGGATGCCGGCGGCGCGCGCCTTCTGCGCGATGCGGGCGATCAGCTCCTCCA-- 542552 Query 95792 TCTTTCTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTAG 95851 | |||||| | || ||| || | ||| || | ||||||| | ||||||||| | Sbjct 542553 -CCTTCTTGCCGACGATCATGATCATGTCGGCGAATTCGTCGATAATGACCACGATGAAC 542611 Query 95852 GGGAG 95856 || || Sbjct 542612 GGCAG 542616 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 95960 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATC 96019 ||||||||||||||| || ||||| || || || ||| | || |||| |||| Sbjct 542822 TCGGTGACCACCGGCGTCAGCAGGTGCGGAATCTTGTCGTAGACCGACAGCTCCAGCATC 542881 Query 96020 TTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACC 96079 || |||||||||||||| || | | | || |||| | | |||||||| | Sbjct 542882 TTGGGGTCGATCATGATCAGGCGCAGCTCGGCCGGCGTGGCCTTGAACAGCATGGACAGG 542941 Query 96080 AGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGG 96139 | ||| | ||||| | ||||||||||| ||||||| ||| || |||||||||||| Sbjct 542942 ATCATGGCGTTGACGCCCACCGACTTGCCCGAACCGGTGGTGCCGGCGACCAGCAGGTGG 543001 Query 96140 GGCATTTTGGCCAGGT 96155 ||||| ||||||| Sbjct 543002 GGCATGCGTGCCAGGT 543017 >seq68 Length=444459 Score = 96.9 bits (106), Expect = 2e-15 Identities = 126/172 (73%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 95684 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATG 95743 ||||| ||| |||| || || || || |||||||||||||||| || ||| || ||| Sbjct 286687 TTGATCGTGCCGGTGATGACGTCGACCGAAGGCCGCTGCGTCGCCATGATGAGGTGGATG 286746 Query 95744 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 95803 || | || |||||| |||| || | || ||| ||||||| |||||| | | Sbjct 286747 CCCGAGGCCCGCGCCATCTGCGCAAGACGCTGGATGCAAGCCTCGATCTCTTTCCCG--G 286804 Query 95804 CCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTAGGGGA 95855 || ||||||| ||||| |||| ||||||||| | || ||||| ||||||| Sbjct 286805 CC-ACCATCATCAGGTCGGCCATCTCGTCGACGATGACGACGATATAGGGGA 286855 >seq15036 Length=40235 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 6238 CCGCCGCACATGATCGGCGATACGGAAAAGTCCACCTCCTGGGGCACGGGCATTGAGCAG 6297 || || |||||||||||||| ||||| || ||| | ||||||||||||||||||||||| Sbjct 16065 CCACCTCACATGATCGGCGAGACGGAGAAAACCAGCGCCTGGGGCACGGGCATTGAGCAG 16006 Query 6298 CAATCCATCGGATTCGT 6314 |||||||| ||||| Sbjct 16005 ATGTCCATCGGTTTCGT 15989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350974542867116