Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 140 5e-27 seq469 98.7 2e-14 seq103 87.8 3e-11 >seq4 Length=924746 Score = 140 bits (154), Expect = 5e-27 Identities = 302/447 (68%), Gaps = 11/447 (2%) Strand=Plus/Minus Query 2174945 GCCCCGCAGCACAATGTGACCGTCGGGGTTGCCAGTGCTGCGGCAGGCGGCAGCGCGACC 2175004 ||| |||||||| | || |||| | ||||||| ||| || | | | || | || Sbjct 683717 GCCGCGCAGCACGACATGGCCGTAGCGGTTGCCGGTGGTGTTGATGACCGCGACCTTGCC 683658 Query 2175005 GTCGCCGTCGATCCAGAGAAAGGTGTGTGGCTGCGCGGCGGTGCGCACGGCATCGAGCGC 2175064 |||| ||||||| | ||| ||| |||| || | | | | | ||| ||| | | || Sbjct 683657 GTCGGCGTCGATGCCGAGGAAGCTGTGCGGGTTCTGCACCGAGAGCAGGGCGTTGGTGGC 683598 Query 2175065 CG--TTGCCACGCTGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGAC 2175122 | ||| | || ||||||||||||||| || || || |||||| ||| ||| ||||| Sbjct 683597 CACCTTG--AGGCCGCCGTCGGTGCCGTTCTTGAAGCCCACCGGCGACGACAGGCCCGAC 683540 Query 2175123 GCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACG 2175182 | ||||||||||||| ||| || |||||||||||||| | || ||| || | Sbjct 683539 GACATTTCGCGGTGCGTCTGCGATTCCGTGGTGCGCGCGCCGATCGCCGACCAGGCGATC 683480 Query 2175183 AGGTCTGCCAAATAGGGCGCCACCAAAGGGCTGAGAAACTCGACAGCCACGGGCTGGCCG 2175242 ||||| || | ||| | || ||| ||| ||| || |||| ||||| Sbjct 683479 AGGTCGTGCAGGAACTGCGGCGACATGGGGTCGAGCGCTTCGGTGGCGCAGGGCAGGCCG 683420 Query 2175243 ACGTCGACGACCAGGTCGCGCAGCAGTCGACG--CGATGTGGCGAGGCCGGCGGCCAGGC 2175300 | ||| | || ||| ||||||| || ||||| | |||||| | | | Sbjct 683419 AGCTCGTTG---AGTTCGAGCAGCAGCTTGCGGCCGATGCG--CAGGCCGTCCTGGATAC 683365 Query 2175301 GGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCG 2175360 || |||| | || | || |||||| || |||||||||||| || ||||| ||||||| Sbjct 683364 GGAACGAATCATCCATGTACGGGTCGTTGATCAGGCCCTTCCAGCCCACGGTGGTGCGCG 683305 Query 2175361 GCTTTTCGACATAGGCGCGCATGACCA 2175387 |||| |||| ||| |||||||||||| Sbjct 683304 GCTTCTCGAAATACACGCGCATGACCA 683278 Score = 129 bits (142), Expect = 9e-24 Identities = 286/417 (69%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 118625 CACGCCGCGCATGCACACGCACATGTGGAGGCCCTCGA-GCACGACGCCGACGCCGCGCG 118683 |||||| ||||| || ||||||||| | |||||| | | |||| ||||| || Sbjct 781497 CACGCCTCGCATCATCATGCACATGTGCTTGGCCTCGATGGTCACCGCC-ACGCCTTTCG 781439 Query 118684 CGCCCGTGACCTCGCTG-ATGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGG 118742 || | ||||| ||||| ||| || |||||||| || || |||||| | ||| Sbjct 781438 CGTCGGTGACG-CGCTGGATGGCGTCCGCGATCTGCTTGGTCAGGTTCTCCTGGATCTGC 781380 Query 118743 AAGCGGTCCGAGAGCATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCC 118802 | |||| || | ||||||| ||||||||| || |||| ||| || | | | |||| Sbjct 781379 AGGCGGCGCGCGTACATGTCGGCGATGCGCGCGACCTTGGACAGTCCCAGCACCTTGCCG 781320 Query 118803 GCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATG 118862 | || | |||| |||||||| |||||||||| ||||||||||| ||||||||||||| Sbjct 781319 GACGGGATGTAGGCCACGTGCACCTTGCCGATGAAGGGCAGCAGGTGGTGCTCGCACAGC 781260 Query 118863 GAGAAAAAGTCAATGTCGCGCACGGTCACCATCTCGCCCGACGTCTCG--GCAAAGAGGG 118920 || | | || ||||| || |||||||| | || ||| || | |||| || Sbjct 781259 GAATACAGCTCGATGTCCTTGACCAGCACCATCT-GGTCGTTGTC-CGACGGGAAGATGG 781202 Query 118921 CGTCGCCGACGGCCTCGGCCAGGGTCAGGCGGTGGCCGCGCGTGC---GCTCCACCATGG 118977 | | | |||| || | | |||| | | | || | ||| | | | | || Sbjct 781201 CATTGTTGACGATGACGTCGA-GGTCTTCC--TCGTAGCCCTTGCACAGGTACTTGAAGG 781145 Query 118978 CCTTGGCCACGCGCATGGGCGTGTCCAAGAGGCCCTCGCGCGCCACGTCCTCGCCCA 119034 ||||||| ||||| |||||||||||| ||||| ||| ||| ||||||||||| Sbjct 781144 CCTTGGCGGCGCGCTTGGGCGTGTCCAGCAGGCCGGGGCGGTCCAGGTCCTCGCCCA 781088 >seq469 Length=271783 Score = 98.7 bits (108), Expect = 2e-14 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || |||||||| |||| | || ||||||||||| || |||||| || | ||| | Sbjct 10529 ACACTCTTTGAACTGATTTTGGCTGCCAACTACCTTGATATCAAGGGTCTTTTAGATGTT 10588 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||| || |||||| | ||||| |||||| | ||||| || ||||||||||| Sbjct 10589 ACTTGCAAGACGGTAGCCAACATGATCAAAGGCAAGACTCCCGAAGAGATCCGCAAGACA 10648 Query 2035746 TTTAACATCAAG 2035757 || ||||||||| Sbjct 10649 TTCAACATCAAG 10660 >seq103 Length=407632 Score = 87.8 bits (96), Expect = 3e-11 Identities = 135/187 (72%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 106963 AGTGACGGAAATGGCGCATGCCGGTAAAGACCATGGCGACGCCGGCCTCGTCGCACGCGG 107022 |||| ||||| || |||||||| || || |||||||||| |||||||||||| || | Sbjct 72278 AGTGCCGGAATTGCCGCATGCCCGTGAACACCATGGCGATCCCGGCCTCGTCGGCAGCAG 72219 Query 107023 CGATCGAGGGCTTGTCGCCGCCGCGCGACCCGCCCGGCTGCACGATGGCGACGACG-CCG 107081 | ||| || | || | | ||| ||||||||||| | ||||||| ||| | ||| Sbjct 72218 CAATC---ACCTCGGCGTCACGCATCGAGCCGCCCGGCTGGATGATGGCGGCGATGCCCG 72162 Query 107082 CCGGCGATGGCCTTGCTCG-GCCCGTCGGGAAAGGGAAAGTAGGCGTCGCTGGCCATCAC 107140 || || ||| ||| ||| |||||| | || || ||| ||||||| |||||||| Sbjct 72161 CCTTCG-CGGCATTG-TCGATGCCGTCGCGGAACGGGAAGAAGGCGTCCGACGCCATCAC 72104 Query 107141 TGTGCCC 107147 | |||| Sbjct 72103 CGCGCCC 72097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7897073874623604