Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq12585 187 7e-43 seq164795 172 2e-38 seq16267 134 4e-27 seq52710 105 2e-18 seq29819 100 8e-17 seq5373 100 8e-17 seq7 82.4 2e-11 seq50 80.6 7e-11 seq4 80.6 7e-11 seq1 80.6 7e-11 >seq12585 Length=48618 Score = 187 bits (206), Expect = 7e-43 Identities = 273/383 (71%), Gaps = 6/383 (2%) Strand=Plus/Minus Query 37150 CACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGAC 37209 |||||||| | | | |||||||| || || |||||||| || ||| |||| || Sbjct 43555 CACTTCGGTGAAGAGGTGCTGGTAACGCGAAAAGGTGCGGTGTCGGCGAAGAAGGGTGAG 43496 Query 37210 CTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGGCAAGGGAAAT 37269 ||||| |||||||| ||||| ||||| || ||| |||||||| |||||| ||| || Sbjct 43495 CTGGGGATCATCCCCGGCTCCATGGGGGCCAAGAGCTTCATCGTACGCGGCCTGGGGAAC 43436 Query 37270 TCCGAATCGTTCTGCTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGCA 37329 ||| |||||||||| ||||||||||| ||||| |||| |||||||| || | || Sbjct 43435 GAGGAAGCGTTCTGCTCCTGCAGCCACGGCGCCGGCCGAACCATGAGCCGTACCAAGGCG 43376 Query 37330 AAACGCCGGTTCACAGTCGAGGATCATGAGGCGGCCAC--CAAAGGTATCGAGTGCCGCA 37387 || | ||| || || || || || |||||| | | | |||| ||||| | Sbjct 43375 AAGAAGCTGTTTACCGTGGACGACCAGATCAAGGCCACGGCCCACG--TCGAATGCCGAA 43318 Query 37388 AAGATGCCGAAGTGATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGG 37447 | || ||||| ||||||||||| | || ||| |||||||||||||| ||| |||| Sbjct 43317 AGGACGCCGACGTGATCGACGAAATCCCGATGGCCTACAAGGACATCGACCAGGTAATGG 43258 Query 37448 CCGCGCAATCCGCCCTGGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGG 37507 ||| || || |||||||| | |||| || ||||| || || || |||||||| | Sbjct 43257 ACGCCCAGCGCGAGCTGGTGGAAGTGATGCATACCCTGCGACAGGTGGTATGCGTGAAAG 43198 Query 37508 GTT--GAGGATTAAGAACATGAA 37528 | | || || ||| || |||| Sbjct 43197 GATAGGAAAATGAAGTACCTGAA 43175 >seq164795 Length=1075 Score = 172 bits (190), Expect = 2e-38 Identities = 258/359 (72%), Gaps = 27/359 (8%) Strand=Plus/Plus Query 23399 TGTCGTTACCGGCCTGGCGACCACCAAGCAGCAGAAGTTCGCCTCTGAAGCTGTCCACCA 23458 |||||| |||| | | ||||| || |||||| | | ||| ||| | |||| || | Sbjct 292 TGTCGTCACCGCTCGGACGACCGCCGAGCAGCTGCATGGTGCC-CTGCA--TGTCGACGA 348 Query 23459 CAATTTCGGTGGTGTAG---TTGGTCGCGCCGTCTTTTTCCCACTTGCGTGTCTGCAGCT 23515 |||||||||||||| ||| | ||||| |||||||||| ||| |||||||||| Sbjct 349 TGATTTCGGTGGTGTAACGCTTGATA---CCGTCCTTTTCCCACTCGCGGGTCTGCAGCT 405 Query 23516 TGCCGATGATCGCGCATTCACTT-----CCCTTGCGCAGATACTCGCCGGCAATCTCGGC 23570 |||| ||| | ||| | ||||||||||| || |||||||| |||||||| Sbjct 406 TGCCCTCGATG-----TACACCTGCGAACCCTTGCGCAGGTATTCGCCGGCGATCTCGGC 460 Query 23571 GACCTTGCCGAAGAACACGACGCGGTGCCATTCGGTCTTTT---CCTTGCGCTCGCCGGT 23627 |||||||||||| | | ||||||||||| |||||||| | |||| || ||||| Sbjct 461 GACCTTGCCGAACAGGGCAACGCGGTGCCACTCGGTCTTCTCGACCTT---CTGACCGGT 517 Query 23628 CTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGCCGTT 23687 ||||||||| |||| || ||||||||||| | |||| ||| |||| |||| | Sbjct 518 CTGCTTGTCGGTCCACTGCTCGCTGGTGGCCAGGCTCAGGTTGGTGACCGCATTGCCGCT 577 Query 23688 TTGCAGGTAGCGCACTTCCGGGTCATTACC-CAGGCGGCCAATCAGGTCTACTTTGTTA 23745 |||||||||| ||||||||| | || |||| ||| | ||| ||||||||| Sbjct 578 GGGCAGGTAGCGTGTTTCCGGGTCCTGGCCGCAGG-TGCCGACCAGAATGACTTTGTTA 635 >seq16267 Length=36697 Score = 134 bits (148), Expect = 4e-27 Identities = 254/371 (68%), Gaps = 2/371 (1%) Strand=Plus/Minus Query 37141 AAAGAAAATCACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGGTGCTGTTCGGGCC-CG 37199 |||||| | || | ||||| | | ||| |||| || || ||||||||||| | ||| Sbjct 18391 AAAGAAGAGCATTACGGCGAAGAAGTGATGGTCACTCGTAAAGGTGCTGTCAGCGCCAAA 18332 Query 37200 CGAGGGCGACCTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGG 37259 | || | | | || || || || ||||| |||||||| ||||| || || |||||||| Sbjct 18331 CTTGGACAATAT-GGAATTATTCCAGGCTCAATGGGTGCCAAGTCCTTTATTGTTCGCGG 18273 Query 37260 CAAGGGAAATTCCGAATCGTTCTGCTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCG 37319 |||||| |||||||| ||||| || || || || |||||| |||||||||| Sbjct 18272 ACTTGGAAATCAGGAATCGTTTTGCTCATGTTCACATGGAGCAGGTCGAGTGATGAGCCG 18213 Query 37320 GGCCGAAGCAAAACGCCGGTTCACAGTCGAGGATCATGAGGCGGCCACCAAAGGTATCGA 37379 || ||||| ||||| || || || || || ||||| ||| || ||||| | || Sbjct 18212 TGCGGAAGCCAAACGACGCTTTACGGTTGAAGATCAGATTGCGCAGACTGAAGGTGTGGA 18153 Query 37380 GTGCCGCAAAGATGCCGAAGTGATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGC 37439 ||||| |||||| | | || || || || | ||| |||| || || || || | Sbjct 18152 ATGCCGTAAAGATTCTGCTGTAATTGATGAAATTCCATCGGCCTATAAACCGATTGAAGA 18093 Query 37440 GGTCATGGCCGCGCAATCCGCCCTGGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTG 37499 |||||| || ||| || |||| || | ||| | || | | ||||| || || Sbjct 18092 TGTCATGAAAGCTCAAAGCGATTTGGTTGAAGTGGTGTATACATTAAGACAAGTGGTGTG 18033 Query 37500 CGTGAAGGGTT 37510 || ||||||| Sbjct 18032 TGTTAAGGGTT 18022 >seq52710 Length=7253 Score = 105 bits (116), Expect = 2e-18 Identities = 161/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 37288 TGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGCAAAACGCCGGTTCACAGTC 37347 ||||||||||| ||||| || |||||||||| | || || | | | |||| | Sbjct 7233 TGCAGCCACGGCGCCGGCCGGGTGATGAGCCGCGGCGCTGCGCGCCAGCAGATCACGCTG 7174 Query 37348 G---AGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGATC 37404 | || ||| ||| ||| || | | | | || |||||||| || || ||| | Sbjct 7173 GCCCAGCATCGTGAAGCGACCGCGCACG---TGGAATGCCGCAAGGACAGCGGTGTGCTG 7117 Query 37405 GACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCCTG 37464 |||||| |||| ||||| |||||| ||||| | || |||||||| || || ||| Sbjct 7116 GACGAGTCGCCGGCGGCGTACAAGTCGATCGACGATGTGATGGCCGCACAGCTCGATCTG 7057 Query 37465 GTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTTGA 37512 || ||| | |||||||||||||| ||||| | ||||||||||| ||| Sbjct 7056 GTCGACGTGGTGCACACGCTGCGGCAAGTGCTGTGCGTGAAGGGATGA 7009 >seq29819 Length=16985 Score = 100 bits (110), Expect = 8e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| |||| ||||| ||||||||| |||| | ||||||||||||| |||||||||| Sbjct 14144 ATGGCGCACCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATC 14085 Query 21122 CAGCTGAGCTACGGG 21136 ||||||||||||||| Sbjct 14084 CAGCTGAGCTACGGG 14070 >seq5373 Length=95907 Score = 100 bits (110), Expect = 8e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| || |||||||||||||||||||||| | ||||||||||||| |||||||||| Sbjct 62081 ATGGCGCGCCTGACAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATC 62140 Query 21122 CAGCTGAGCTACGGG 21136 || ||||||||| || Sbjct 62141 CAACTGAGCTACAGG 62155 >seq7 Length=747525 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| ||||| ||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 439841 ATGGCGCGCCCGATAGGATTCGAACCTATGACCCACGGCTTAGAAGGCCGTTGCTCTATC 439900 Query 21122 CAGCTGAGCTACGGG 21136 || |||||||||||| Sbjct 439901 CAACTGAGCTACGGG 439915 >seq50 Length=481860 Score = 80.6 bits (88), Expect = 7e-11 Identities = 158/232 (68%), Gaps = 14/232 (6%) Strand=Plus/Minus Query 23496 CCACTTGCGTGTCTGCAGCTTGCCGATGATCGCGCATTCACTT-----CCCTTGCGCAGA 23550 |||||| || || | ||||||||| ||| || ||| | || || |||||| Sbjct 154913 CCACTTACGGGTTTTCAGCTTGCCTTCGAT-----ATACACCTTAGAGCCTTTACGCAGA 154859 Query 23551 TACTCGCCGGCAATCTCGGC--GACCTTGCCGAAGAACACGACGCGGTGCCATTCGGTCT 23608 || ||||||||||| || || ||| || | | | ||||| |||||||||||||| | Sbjct 154858 TATTCGCCGGCAATTTCTGCCAGACGCTG--GTAAATTACGACCCGGTGCCATTCGGTTT 154801 Query 23609 TTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGT 23668 || || |||||||| || || |||||| |||| || || || | ||| | || Sbjct 154800 GCTCTTTCATTTCGCCGGTAGCTTTATCTTTCCAGCTTTCAGAGGTCGCAATGCTCAGGT 154741 Query 23669 TGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATTACCCAG 23720 | |||||| |||| | ||| || || |||||||| || | ||||| Sbjct 154740 TAGCGACGGCGCCGCCCTGCGGCATATAACGGACTTCCGGATCCTGGCCCAG 154689 >seq4 Length=924746 Score = 80.6 bits (88), Expect = 7e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| |||| |||| ||||||||| |||| | ||||||||||| ||||||||||| Sbjct 715560 TGGCGCGCCCGGCAGGGCTCGAACCTGCGACCCTCGGCTTAGAAGGCCGATGCTCTATCC 715501 Query 21123 AGCTGAGCTACG 21134 |||||||||||| Sbjct 715500 AGCTGAGCTACG 715489 >seq1 Length=1655743 Score = 80.6 bits (88), Expect = 7e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||| ||||||||||||| |||||||||| ||| | ||||| ||| | |||||||||| Sbjct 1211249 TGGTGACCCCGACAGGACTCGAACCTGTAACCTGCCCCTTAGGAGGGGGCTGCTCTATCC 1211190 Query 21123 AGCTGAGCTACGGGGCC 21139 || ||||| |||||||| Sbjct 1211189 AGTTGAGCCACGGGGCC 1211173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138985091818832