Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq5 154 2e-32 seq51 98.7 1e-15 seq1973 86.0 7e-12 seq549 84.2 2e-11 seq7 82.4 8e-11 >seq5 Length=869209 Score = 154 bits (170), Expect = 2e-32 Identities = 312/462 (68%), Gaps = 6/462 (1%) Strand=Plus/Minus Query 145894 GAACAGAGTGATGTAATCGTCTTTAATCAGACGTTCAAACATCAGGTCGTTGATTTGAAC 145953 ||||| ||||| || || ||||||||||| || | | |||||||| ||| | || || Sbjct 711211 GAACAAGGTGATATAGTCATCTTTAATCAGGCGCTGATACATCAGGCGGTTAAACTGCAC 711152 Query 145954 ACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTGAGTACGAG 146013 || || |||| || | | ||||| || ||||| || ||| || || ||||| || Sbjct 711151 GCCATAGTCCAGATGCCTTACCCGGTTCTCTTCTACACCGCGGTTATTTTTCAGTACCAG 711092 Query 146014 GAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCGCCACCGCGAAC 146073 || ||| ||||||| ||||| | || ||| ||| || || || ||||| || || Sbjct 711091 CAGCGATTCCACTTCCAGATGCCACAAGGGGTAGAACAGGGTGGCGGCACCACCACGCAC 711032 Query 146074 TCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAATAACTCC 146133 || ||||| ||||| || ||||| || |||| || || | || || ||| || Sbjct 711031 ACCGCCTTGCGAGCAGCTTTTTACTGCGGTCTGGAAATGCTTATAAAACGGGATACAGCC 710972 Query 146134 AGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATCATACCTGCGTT 146193 |||||| | |||| || | |||| |||| || ||||| |||||||| Sbjct 710971 AGTATGAAAGGCTTCGCCATTACGGATTGGGCTACCTAAAGCGCGAATACGGCCTGCGTT 710912 Query 146194 AATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCAGATTTG---TT 146250 ||| || ||||| || || | || | ||| | |||||| | || || || || Sbjct 710911 AATACCAATACCTGCGCGCTGCGACACGTATTTTACAATGG---CACTGGAGGTGGCATT 710855 Query 146251 AATTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGACGAGTAGG 146310 || || | ||| |||||| ||||| | ||||| || ||||| ||||| || || Sbjct 710854 GATCGAATCCAGGCTGTCACCACACTCAATCAGTACGCAGGAGCTGAACTGACGGGTTGG 710795 Query 146311 AGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTTT 146352 ||||| | || | ||||||||| || ||||| ||||| || Sbjct 710794 GGTACGCACGCCCGACATAATAGGTGTCGGCAGTGAAATCTT 710753 >seq51 Length=473680 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 74609 TGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTAACC 74668 ||||| ||||||| ||||||||||| || ||| | ||||||||||||| ||||||||||| Sbjct 469304 TGGTGGCCCCAGCTGGACTCGAACCAGCGACCGATCGATTATGAGTCGAGTGCTCTAACC 469245 Query 74669 AATTGAGCTATAGGGCC 74685 || |||||||| ||||| Sbjct 469244 AACTGAGCTATGGGGCC 469228 >seq1973 Length=162522 Score = 86.0 bits (94), Expect = 7e-12 Identities = 78/94 (83%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 76069 TGGAGGAAGCGGTGGGATTCGAACCCACGGACCGTATCACTACGGCCTC--CGGTTTTCA 76126 ||| |||||||||| ||||||||| |||||| | |||| || |||| ||||||||| Sbjct 4828 TGGCGGAAGCGGTGAGATTCGAACTCACGGAG-GACTCAC-AC--CCTCGTCGGTTTTCA 4883 Query 76127 AGACCGGTGTAATAAGCCGCTCTACCACGCTTCC 76160 ||||||||| | ||| ||||||| |||||||||| Sbjct 4884 AGACCGGTGCATTAAACCGCTCTGCCACGCTTCC 4917 >seq549 Length=260093 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 ||||||||| || ||| ||||||| |||| || |||||| |||| |||||||||||| Sbjct 97366 TGGTGCCGGATATAGGAGTCGAACCTACGACCTTCGCATTACGAATGCGCTGCTCTACCA 97425 Query 72164 ACTGAGCTAAACCGGC 72179 |||||||||| ||||| Sbjct 97426 ACTGAGCTAATCCGGC 97441 >seq7 Length=747525 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 72103 TTGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACC 72162 ||||||||| ||| | || |||||| | ||||| || ||||||| | || ||||||||| Sbjct 555110 TTGGTGCCGCTTATCCGAGTCGAACGGATGACCTACTGATTACAAGTCAGTTGCTCTACC 555169 Query 72163 AACTGAGCTAAACCGGCT 72180 |||||||||||| ||||| Sbjct 555170 AACTGAGCTAAAGCGGCT 555187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553106265452160