Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_023573.1 Length=142094 Score E Sequences producing significant alignments: (Bits) Value seq57423 91.5 1e-13 seq5373 87.8 2e-12 >seq57423 Length=6334 Score = 91.5 bits (100), Expect = 1e-13 Identities = 213/315 (68%), Gaps = 11/315 (3%) Strand=Plus/Minus Query 131074 CCTGATAGTGGAGACCCTGTTAAAATTATTTGCGGAGACCCTGATGCAGATACTGAATAT 131133 ||||| ||| || || || |||||||| || || || ||||||||||| || ||| Sbjct 5788 CCTGACTCTGGTGATCCAGTGAAAATTATCTGTGGTGATCCTGATGCAGAG-CTAGATAG 5730 Query 131134 GAACG----TAAAGGTGCAGTAGAAGTACTTTGGGATACCTTTGGAGGTACTGAAACTGA 131189 || |||||||||||| || | ||||| | ||||| || || ||||| Sbjct 5729 CCCCGCTTATAAAGGTGCAGTGCAATGTTTATGGGAAATTTTTGGCGGCACGGAAACAAC 5670 Query 131190 AAAAGGGTACAAAGTATTAGATGAACATGTAGGATTAATTTACGGAGACTCTATTA-ACT 131248 |||| || |||||| | | || | ||| || ||||| || || ||||| |||| || Sbjct 5669 TCAAGGCTATAAAGTACTCAACGAGCGTGTTGGTTTAATCTATGGTGACTCGATTACTCT 5610 Query 131249 ATGAACGTGCTCAACAAATTTGTGAAGGATTAAAAGAAAAAGGTTTTGCAAGTATTAATG 131308 | |||||||| ||| | || | |||| || ||| ||||| ||||| | |||| Sbjct 5609 A-GAACGTGCGCAAAATATCTTAAAAGGCTTGGAAGCCAAAGGCTTTGCTTCGAATAATC 5551 Query 131309 TTGTATTAGGTGTAGGTAGTTTCTCTTAC--CAATTTAATACTCGTGATACTCACGGGTT 131366 | || || ||| | ||||| | | ||| | ||||| |||||||| || || || Sbjct 5550 TAGTCTTTGGTATCGGTAGCTATACCTACAACTATTTA--ACTCGTGACACCTTTGGTTT 5493 Query 131367 TGCAATCAAAGCAAC 131381 ||| | ||||| || Sbjct 5492 TGCCGTAAAAGCCAC 5478 >seq5373 Length=95907 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 131074 CCTGATAGTGGAGACCCTGTTAAAATTATTTGCGGAGACCCTGATGCAGATACTGAATAT 131133 ||||| ||| || ||||| |||||||| || || || ||||| ||||| || ||| Sbjct 19995 CCTGACTCTGGTGATCCTGTGAAAATTATCTGTGGCGATCCTGAAGCAGAG-CTAGATAG 20053 Query 131134 GAACG----TAAAGGTGCAGTAGAAGTACTTTGGGATACCTTTGGAGGTACTGAAACTGA 131189 || |||||||||||| || | ||||| | ||||| || || ||||| | Sbjct 20054 TCCCGCTTATAAAGGTGCAGTGCAATGTTTATGGGAAATTTTTGGCGGCACAGAAACAGC 20113 Query 131190 AAAAGGGTACAAAGTATTAGATGAACATGTAGGATTAATTTACGGAGACTCTATTAACTA 131249 |||| || |||||| | |||| | ||| || || || || || ||||| |||| | Sbjct 20114 TCAAGGCTATAAAGTACTGAATGAGCGTGTCGGTTTGATCTATGGTGACTCGATTACCCT 20173 Query 131250 TGAACGTGCTCAACAAATTTGTGAAGGATTAAAAGAAAAAGGTTTTGC 131297 |||||||| ||| | || | |||| || ||| ||||| ||||| Sbjct 20174 AGAACGTGCACAAAATATCTTAAAAGGTTTGGAAGCCAAAGGCTTTGC 20221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 453548670210240