Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq83234 219 4e-52 seq5 114 1e-20 seq16664 102 8e-17 seq114 82.4 7e-11 >seq83234 Length=3891 Score = 219 bits (242), Expect = 4e-52 Identities = 543/807 (67%), Gaps = 28/807 (3%) Strand=Plus/Plus Query 25996 AATCCATTCATTTTTAAAAGCAATCTCTTCCAGGCATGCAACCTTCATA-CCTTGTTGCT 26054 || ||| | ||| || || || || ||||| | ||| || | || ||| ||||| | Sbjct 1948 AAGCCAGTTATTGTTGAATGCTATTTCTTCTAAGCAAGCTATTTT-ATAGCCTTGCCTTT 2006 Query 26055 TCTCTATTGCATGAACAAATTGAGATGCTTCCA-TAAGACTTTCATGTGTTCCTGTATCC 26113 | ||||||| | ||||||||| | ||||| | |||| |||||||||||||| ||||| Sbjct 2007 TTTCTATTGTCTCAACAAATTGTGCAGCTTCTAGTAAG-CTTTCATGTGTTCCAGTATCT 2065 Query 26114 AGCCAAGTGAAACCTCTTCCTA-GTTTACAGACACGTAAAGTCTTTTCT--TTCCAGTAC 26170 | ||| | || || | |||| | || || | ||| | ||| || | ||| Sbjct 2066 AACCATGCAAAGCCCCGACCTAAGCGCTCA---ACATTAAGCTTACTCTGTTTTAAATAC 2122 Query 26171 ATCTCATTTATATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCT 26230 || ||||||| ||||| || | || ||||| ||||| || || |||| ||| Sbjct 2123 ATTTCATTTAAGCATGTAATTTCAAGTTCACCTCTTTGCGAAGGCTTCACCTTCTTTGCT 2182 Query 26231 TTCTGTATAACAGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggt 26290 | | | |||||| ||||||||||| || | ||||| | || |||| ||| ||| Sbjct 2183 ATATCAACAACAGAGTTATCGTAAAAATAAAGACCTGTAACAGCAAAGTTAGATTTAGGT 2242 Query 26291 gtttttggtttttCTTCAAT---ACTCACCACTGTACCTTCAGAATCAAACTCAACAACA 26347 || ||||||||||| || | | | | || || | | ||||||||||| || Sbjct 2243 ACTTCAGGTTTTTCTTCTATTGAAATAGCTTTTTTATCT-CGG--TCAAACTCAACTACT 2299 Query 26348 CCAAATCTTTCAGGATCATTTACGTGATACCCAAAGATATTAGCTCC---ACCATTCTTT 26404 ||||| | ||| ||||| ||||| || || ||||| | | ||||||| |||||| ||| Sbjct 2300 CCAAAACGTTCTGGATCCTTTACTTGGTATCCAAAAACAGTAGCTCCTAAACCATTTTTT 2359 Query 26405 TCAATATGTTCTTTAGCAGAATCTAAAATGCTACCAAAACTCTGACCAAAGAATAAATTA 26464 || | |||| |||| | | | | ||||| | ||| | || | |||| Sbjct 2360 GCATT---TTCTACAGCATTTTTAAGTTTAGGAGTAAAACCTTCGCCATAAAAAATATTA 2416 Query 26465 TCACCTAGCACAAGTGCTACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCT 26524 || |||| || || ||| || | ||| || ||| | || || | |||||| ||| Sbjct 2417 TCTCCTAATACTAGGCAAACATCGTCATTACCGATGAAGCTTTCGCCTAAAATAAATGCT 2476 Query 26525 TCTGCTAAACCTTTTGGGCTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAA 26584 | |||| ||||| ||| | ||||| || ||| ||| ||| ||||| ||| Sbjct 2477 TGCGCTAGACCTTCTGGCTCAGGCTGTACTGTATAACTTAGTTCAATGCCAAACTGTGAA 2536 Query 26585 CCATCACCTAGAAGA--TTTACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTA 26642 ||||| |||| | |||| || | | | ||||||||| || || || |||| | Sbjct 2537 CCATCTCCTAATAACCGTTTAAAAGACTCAGA--ATCTTCTGGGGTGGTTATAATTAAAA 2594 Query 26643 TTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGT 26702 |||| | ||| |||| |||||||| ||| || || || ||||| ||||| || ||||||| Sbjct 2595 TTTCTCGAATACCAGCAAGCATTAAGACTGAAAGAGGGTAATAGATCATTGGCTTATCGT 2654 Query 26703 AAATTGGTAATAGTTG-TTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTA 26761 |||| ||||||| || ||| || |||| || || | || ||||| | || ||| Sbjct 2655 AAATGGGTAATAACTGCTTTGATACCCCCATT-GTTATAGGATAAAGGCGAGTGCCAGAT 2713 Query 26762 CCACCTGCTAAGATAATACCTTTCATA 26788 || || || | ||| || ||||||||| Sbjct 2714 CCCCCAGCCAGGATTATTCCTTTCATA 2740 >seq5 Length=869209 Score = 114 bits (126), Expect = 1e-20 Identities = 218/318 (69%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 27115 GCGTGATCGTCAACGTATAACCAGTCTCTTACTTGAAGACCATTACCATAAACAGGGATT 27174 |||||||| || || || | ||| || | || || | |||| |||||| || || | Sbjct 410090 GCGTGATCTTCTACATAAAGCCAATCGCGCACCTGTAAGCCATCACCATATACCGGCAAC 410031 Query 27175 GGTTTATGCATTAAGATATTTGTTATCGTTTTAGGTATTAGTTTTTCTGGATGATGATAT 27234 || | ||| ||||| ||| || || |||| |||||| | ||| |||||| Sbjct 410030 GGCTCCCCGGCTAACGCTTTTGTAATCATTAACGGAATTAATTTTTCCGCATGTTGATAT 409971 Query 27235 GCTCCAAAATTATTTGAACAATTTGTTATAACTGTCGGAATACCATAAGTACGATGCCAC 27294 | ||| ||||||| || || || ||||| | ||| | ||||||||||||||||| Sbjct 409970 GGGCCATAATTATTCGAGCAGTTAGTTATTAGCACCGGTAAGCCATAAGTACGATGCCAG 409911 Query 27295 GCTCTTACCAAATGATCGCTTGCAGCTTTAGATGCAGCATATGGACTACTTGGTTTATAA 27354 ||||||||||||||||| || | || ||| || | ||| || || || || ||| Sbjct 409910 GCTCTTACCAAATGATCACTCGACGCCTTACTCGCCGAATAAGGGCTGCTCGGCGCATAG 409851 Query 27355 GGATTCTGTTCTGTAAACGGATAATC-TCCTT--CTTCCAGATCACCATACACTTCATCT 27411 ||| | | || ||||| ||| | ||| | | | | ||| |||||||| ||||| Sbjct 409850 GGAGTATCCTCAGTAAA---ATACGCATCCGTACCATGTAAATCGCCATACACCTCATCG 409794 Query 27412 GTTGAAATATGATGGAAC 27429 || || ||||| || ||| Sbjct 409793 GTAGAGATATGGTGAAAC 409776 >seq16664 Length=35616 Score = 102 bits (112), Expect = 8e-17 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 78950 TTATTCAGGTTGGTGAACCGTGGTGGTGGTATAACACAGCTACCAATCTACCGTGTATTT 79009 |||| || | || || |||||||||||||||||| || || |||| | || ||||| | Sbjct 13246 TTATGCAAATAGGAGAGCCGTGGTGGTGGTATAACCAAGGTAGCAATTTGCCTTGTATCT 13187 Query 79010 ATGATTATACAACCAAAGTTGCATTTAATAATGAAACTGGATTATATGCACAAGATGTTG 79069 |||||||| | || ||| |||| |||||| || || || || ||||||| ||| | | Sbjct 13186 ATGATTATCCGACTAAACTTGCCTTTAATGCAGATACGGGCTTGTATGCACCTGATCTGG 13127 Query 79070 GTACAGTTAA------AAATTATAAAACTGGTACACCATATGATGAAT 79111 | ||| || | || ||||||| || || ||||||||||||| Sbjct 13126 GAACAATTTATGAGGCAATGAATAAAACAGGAACGCCATATGATGAAT 13079 >seq114 Length=395947 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 27208 GGTATTAGTTTTTCTGGATGATGATATGCTCCAAAATTATTTGAACAATTTGTTATAACT 27267 || || |||||||| ||| ||||| | ||| ||||||||||||||||||| | ||| Sbjct 384030 GGAATCAGTTTTTCAGGAAAATGATTGGGACCATAATTATTTGAACAATTTGTCAAAACG 383971 Query 27268 GTCGGAATACCATAAGTACGATGCCACGCTCTTACCAAATGATCGCTTGCAGCTTTAGAT 27327 | || | ||||| ||| ||| | |||| || ||||| || || ||||| || Sbjct 383970 ATAGGTAACCCATACGTATCATGGTAGGCTCGGACAAAATGGTCAGATGACGCTTTTGAC 383911 Query 27328 GCAGCATATGGACTACTTGGTT--TATAAGGATTCTGTTCTGTAAACGGATAATCTC-CT 27384 || | |||||| | ||| | ||| || ||| ||| |||| |||| | | | Sbjct 383910 GCTGAATATGGGGAATGTGGATCGTATGCGGTTTC--TTCCGTAA----ATAAACCCGTT 383857 Query 27385 TCTTCCAGATCACCATACACTTCATCTGTTGAAATATGATGGAACATTTTA 27435 ||| ||| ||||| |||||||| || |||| ||| ||||| | |||| Sbjct 383856 TCTCCCAATGTTCCATATACTTCATCGGTAGAAACATGGTGGAATAATTTA 383806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474359279080320