Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_024123.1 Length=64113 Score E Sequences producing significant alignments: (Bits) Value seq32920 203 1e-47 seq53614 185 4e-42 seq11269 132 2e-26 >seq32920 Length=14210 Score = 203 bits (224), Expect = 1e-47 Identities = 248/336 (74%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 55118 TCATCAGAACCACCTCCCGTTGGCTATCGCGGAGATTGCTGTCGCGGTTCCGGTCGCCCT 55177 |||||||||||||||||| | || || ||||| ||||||| ||||| | ||| | Sbjct 2806 TCATCAGAACCACCTCCCCATCGCGGATGCCGAGATCACTGTCGCTGTTCCAGCCGCGCG 2865 Query 55178 CGAAGCGATGTCGAATATCCGCAACGTCACGCTAGTCGTACTAGCAACCCCGCCGACAGT 55237 |||| | ||||| ||| |||||||| | |||| || || | ||||| ||||| Sbjct 2866 CGAAACAATGTCAAATCCGCGCAACGTAGCCGCCGTCGCGCTTGCGATACCGCCAACAGT 2925 Query 55238 TCCCCAGCCTGCGCCAGTCCCCCAGCGAAATAGACCGACGCTCACCGTCGGGCTACCGAC 55297 ||||||||||| |||||||||||||||||||| ||| | |||| || ||||| || | Sbjct 2926 GCCCCAGCCTGCTCCAGTCCCCCAGCGAAATAGGCCGGGGTTCACGGTTGGGCTGCC-AG 2984 Query 55298 AAACGTCG-CAGGGAAAGACCATCCACGAGTGCCGGTAAACAAGCTGCCGTAAGCGGTAT 55356 | | | || ||| || ||||| ||| || |||||||||| || || || | | || Sbjct 2985 AGAAGGCGATAGGAAACGACCACGAACGGGTTCCGGTAAACAGACTTCCATATGGGACAT 3044 Query 55357 CGACCGCCTGATCGGTAACGCTGGCGTTGAACCAGCAGAGCTGCGTACCGTCTGCGAGTC 55416 | | ||||||||| |||||||||||||||||||| || | ||| || ||||| || || Sbjct 3045 CAATCGCCTGATCAGTAACGCTGGCGTTGAACCAACACATCTGTGTTCCGTCGGCATATC 3104 Query 55417 GGATGTATTCCCCGTTCGCGTTGCTGCCTCGCTCAA 55452 | | ||| || || || || || ||| ||||||| Sbjct 3105 GCACGTAATCGCCATTTGCATTCGCGCCGCGCTCAA 3140 >seq53614 Length=7104 Score = 185 bits (204), Expect = 4e-42 Identities = 108/112 (96%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 53204 ATGAGTGAGGTCCAACGGTTCTGGTGCGATGAGGCGCGGAACATCCGGTGCGTCCGTGAG 53263 |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4870 ATGAGTAAGGTTCAGCGGTTCTGGTGCGATGAGGCGCGGAACATCCGGTGCGTCCGTGAG 4929 Query 53264 GATGACTTCGACGCACTCGAAGCCGAGGCCAAGGCGCTAAGGGAGGAAGTCG 53315 |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 4930 GATGACTTCGACGCACTCGAAGCCGAGGCCCAGGCGCTAAGGGAGGAAGTCG 4981 >seq11269 Length=54388 Score = 132 bits (146), Expect = 2e-26 Identities = 93/106 (88%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 53547 TGCTCGCCGCCGCGCCCGGCACGGAAGTGCCGCAAGCATGGCTCGATGTCCAAGCCGAGC 53606 ||||||||||||||||||||| ||||||||||| |||||| |||| || |||||||||| Sbjct 39825 TGCTCGCCGCCGCGCCCGGCAAAGAAGTGCCGCAGGCATGGATCGACGTTCAAGCCGAGC 39766 Query 53607 GCCGCCGGCAGGTCACTGCCGAAGGATGGACGCCGGAGCATGACGA 53652 | |||||||||||| ||||| || |||||||||||||| ||||| Sbjct 39765 GACGCCGGCAGGTCGAGGCCGAGGGCTGGACGCCGGAGCACGACGA 39720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204586410782904