Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq5 102 9e-17 >seq5 Length=869209 Score = 102 bits (112), Expect = 9e-17 Identities = 206/305 (68%), Gaps = 3/305 (1%) Strand=Plus/Plus Query 27452 CATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCAA 27511 ||||| || ||| || || | || |||||||| || ||||||||| || || ||| Sbjct 710966 CATACTGGCTGTATCCCGTTTTATAAGCATTTCCAGACCGCAGTAAAAAGCTGCTCGCAA 711025 Query 27512 GGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGAG 27571 || ||| | ||||||||||| || || || || || ||||||| | ||||| || Sbjct 711026 GGCGGTGTGCGTGGTGGTGCCGCCACCCTGTTCTACCCCTTGTGGCATCTGGAAGTGGAA 711085 Query 27572 AACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAACCGTATTCGACATATGGAC 27631 || | || ||||||||||| ||||| || || ||||| | | ||| ||||| Sbjct 711086 TCGCTGCTGGTACTGAAAAATAACCGCGGTGTAGAAGAGAACCGGGTAAGGCATCTGGAC 711145 Query 27632 TACGGAATTCAGATTAATGACCTTATGATGGAACGCCTTGGTAAAAATGATTATATTACT 27691 || || | ||| |||| ||| ||| | ||||| |||| |||| ||||| || Sbjct 711146 TATGGCGTGCAGTTTAACCGCCTGATGTATCAGCGCCTGATTAAAGATGACTATATCACC 711205 Query 27692 TTATTTAGCCCTCACGAAATGTCAGGCGAACTATACTACTCGTTCTTTGAAGATCAAGAT 27751 || || ||||| || || | || || || | | |||||||||||||| || Sbjct 711206 TTGTTCAGCCCCTCTGATGTGCCGGG---GCTGTATGATGCCTTCTTTGAAGATCAGGAA 711262 Query 27752 AAATT 27756 || || Sbjct 711263 AAGTT 711267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539926426020480