Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq42597 257 5e-64 seq14312 176 1e-39 seq7140 100 9e-17 seq32920 80.6 9e-11 >seq42597 Length=6154 Score = 257 bits (284), Expect = 5e-64 Identities = 304/412 (74%), Gaps = 0/412 (0%) Strand=Plus/Plus Query 37370 AGCGGGCCCGCAAGGCCATCGCGCAGCGCGACCGTCAGGAGATCAAGGTTCGCAAGGAAA 37429 ||| ||| || |||||||| || | ||||| || |||| ||| |||||| ||||| | Sbjct 1586 AGCCGGCACGGAAGGCCATAGCCGACCGCGAGCGGAGGGAGGTCAGGGTTCGGAAGGAGA 1645 Query 37430 AGCTGAAGTCACGCAGCGACCACATGCGCGACACGCAGCAGGCGTTCAACGAGTGGGTGC 37489 || ||||| || || | | ||||||| | ||||||||||||||||||| | | Sbjct 1646 AGTTGAAGAGTCGGTCGGATCGCCTGCGCGAGGCTCAGCAGGCGTTCAACGAGTTCATTC 1705 Query 37490 GTCACCGTGACGCCGCGCTGCCTTGCGTCAGTTGTGGTCGGCACCACCAGGGCAAGTACG 37549 | | || ||||| | | ||| ||| ||||||| ||||| || ||| | || |||| Sbjct 1706 GCCTGCGCGACGCGGATCAGCCGTGCATCAGTTGCGGTCGCCATCACGACGGGCAGTATC 1765 Query 37550 ACGCCGGGCATTACCGGACAGTGGGGAGCAACCCCGCGCTGCGCTTCGAGCCGCTGAACT 37609 |||||||||| ||||| || || | || ||||| |||||| ||||||||| ||||| Sbjct 1766 ACGCCGGGCACTACCGCACGGTTGCTGCCAGCCCCGAGCTGCGTTTCGAGCCGTTGAACG 1825 Query 37610 GCCACAAGCAATGCGTTCCGTGCAATCAGCACAAGTCCGGAAACGTCGTTGAGTACCGGA 37669 |||||| ||||||| || ||||| | ||||| ||||| || |||| | ||||| | Sbjct 1826 TCCACAAACAATGCGCCCCATGCAACAACCACAAATCCGGCGACATCGTGAATTACCGAA 1885 Query 37670 TCGAGCTGGTGCGCCGCATCGGCATCGTGAATGTGGAGTGGCTCGAAGGACCTCATGAGC 37729 || | || |||||| |||||| || ||| || |||||||| ||||| |||||||| | Sbjct 1886 TCAACCTAGTGCGCAAGATCGGCGCCGAGAAGGTCGAGTGGCTGGAAGGCCCTCATGATC 1945 Query 37730 CTCAGAAGTACACCGTTGAAGAATTGAAAGCCCTTACGGCCAAGTACCGGGC 37781 | | |||| ||| | || ||| | ||||| |||| |||||||| |||||| Sbjct 1946 CCCTGAAGCTGACCATCGACGAAATCAAAGCGCTTAAGGCCAAGTTCCGGGC 1997 >seq14312 Length=42616 Score = 176 bits (194), Expect = 1e-39 Identities = 303/436 (69%), Gaps = 7/436 (2%) Strand=Plus/Minus Query 30805 GGTGATCGCCTGACCGTTGACCACCAGAAGACGCGACCCAGCATCCGAGACTCTTCCCGC 30864 || || ||||| ||||| ||||||||||| ||||| || ||||| || | |||| Sbjct 36781 GGCGAGCGCCTTACCGTCGACCACCAGAACACGCGGCCGAGCATATT-GATT--TCCCTG 36725 Query 30865 CATTTCTCAGCGGTCATTATCTCGTCAGGATATTCGTCATCGTTTTCGCTGCTGATGCGC 30924 | | || || ||||| | |||||||| |||||||| | ||||||||||| | ||| Sbjct 36724 AACTGATCGGCCGTCATCGTTTCGTCAGGGTATTCGTCGTTGTTTTCGCTGCGCACGCGA 36665 Query 30925 ACGGCTC--CCTGAGGAAGCCGGTAGAGGTACTTCACCCTCAGCATGCCGCCATGATTGA 30982 || | |||| | | |||||| |||||||| || ||||||||| | ||||||| Sbjct 36664 ACAGAATGGCCTG--GCATGTTGTAGAGATACTTCACTCTGAGCATGCCGTCTTGATTGA 36607 Query 30983 AAGCGTATATCTCGCCATCAATTATGGATGTGTCGCTCATATCAAAGCCTATGGCGGCGC 31042 | ||||| || || || || | ||| ||| ||| |||| || || || || || | Sbjct 36606 AGGCGTAGATTTCACCGTCGACGATGTGTGTAAAGCTGGTATCGAAACCAATCGCCGCCC 36547 Query 31043 CATCCATGATCAGGCGCTCCATGCTTCGACCTTTTACTCTGGCCACAGCGGCGCTGCTAC 31102 | |||| |||||| | |||||| || || | | ||| ||||| || |||| Sbjct 36546 CGTCCAGGATCAGCCTCTCCATTGATCTTCCCCTGATTCTAGCCACCGCTGCGCAAGATG 36487 Query 31103 CGTCCACTCCAGCGGCCTTCAGCGTTGCATTGCTGAACCTCAGCTTCCTGTCCGACACTT 31162 ||| || ||||| || | | || | || |||||||||||| ||||| || | | Sbjct 36486 GGTCGACACCAGCATCCCTTAAGGTCTCCTTAGAGAACCTCAGCTTTCTGTCAGAAATCT 36427 Query 31163 CAACCACTTCTGTCATTCCGTCCCCGCCGGAAAATTCAACCTCCGCGTAGTAAGGCACTT 31222 || ||| || |||||||| | || | | ||||||||||| |||||||| |||| || Sbjct 36426 CATACACCTCGGTCATTCCATTTCCTGCTGCGAATTCAACCTCTGCGTAGTAGGGCAGTT 36367 Query 31223 CGCACTCATCATCGTC 31238 | |||||||| || Sbjct 36366 CTACTTCATCATCTTC 36351 >seq7140 Length=79588 Score = 100 bits (110), Expect = 9e-17 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 23503 GTGGTGAATCATCAGGGTCAGGGCCTCGCCCTGTTCCTCGATGCATGCCCACTCCATCAG 23562 ||| ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||| Sbjct 14228 GTGATGAATCATCAGCGTCAGCGCCTCACCCTGTTCCTCGATGCCGGCCCACTCCATCAG 14169 Query 23563 CTCAGCCAGCGCCTGCTTCGTGCCGGGCCGCACCCTGAGCCGCAATTCCTCTTCC 23617 ||| ||| ||||| || || || || | ||| | | |||| || |||||| Sbjct 14168 CTCCAACAGGGCCTGTTTAGTCCCTGGTCTAACCTTCAAGCGCAGGTCTTCTTCC 14114 >seq32920 Length=14210 Score = 80.6 bits (88), Expect = 9e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 12954 ATGCCGATCACCGCGCAGCAACTACTGCAGATCCTCCCGAACGCCGGCCAGAGAGCCGGC 13013 ||||| ||||| | ||||||||| |||||||| ||||||||||||||| |||||||| Sbjct 2435 ATGCCTATCACTGAGCAGCAACTGCTGCAGATATTCCCGAACGCCGGCCCTCGAGCCGGC 2376 Query 13014 GTTTTTG 13020 ||||||| Sbjct 2375 GTTTTTG 2369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163016746485664