Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq23155 158 2e-33 seq32926 104 4e-17 seq2234 104 4e-17 >seq23155 Length=22375 Score = 158 bits (174), Expect = 2e-33 Identities = 248/350 (71%), Gaps = 4/350 (1%) Strand=Plus/Minus Query 142959 ATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCAT 143018 || ||| | ||| ||||||| ||| || ||||| | || | |||||||| || || Sbjct 9476 ATATATTCCGATGAAGATGAATGGTCTTGCTGGAAGGAGATGTCTGATCCCGTTTTACAC 9417 Query 143019 ATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCC-CTTAACGGCAAATACGTT 143077 || | | | | ||||| |||| || | || || || ||| | | ||| ||| || Sbjct 9416 ATCCAGTTACGTCGCTGGGCTGATGCGTTAATCATTGCACCTCTTGATGCCAA-TACATT 9358 Query 143078 AGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGA 143137 ||| ||||| || || |||||||| || ||| |||| |||| | | | | |||||||| Sbjct 9357 AGCCAAAATGGCAAATGGTATATGTGACAATCTACTGACATGCACAATTCGGGCCTGGGA 9298 Query 143138 TATAAATAAACCTCTTATTTTT-TGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTA 143196 || || ||||| |||||||| ||||| |||||||||| ||||||||| ||||| Sbjct 9297 TAGAATGAAACCA-TTATTTTTCTGTCCAGCTATGAATACATATATGTGGGATCATCCAT 9239 Query 143197 TTACAGAAAAACATATAGATGCTTTAAAACATATGGGTTTCATAGAAATAGAATGCATAG 143256 | |||| ||| ||| | | | || || || |||| | ||| ||||| ||| | | Sbjct 9238 TGACAGCAAAGCATGTGAAGGAATTGAAGGATTTGGGATACATTGAAATTCCATGTGTGG 9179 Query 143257 aaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGCAGAAGTT 143306 ||||| | |||| || ||||| |||| ||||||||||||| |||||| Sbjct 9178 CAAAAAGATTAGCATGTGGAGATGTAGGTCATGGTGCTATGGCTGAAGTT 9129 >seq32926 Length=14205 Score = 104 bits (114), Expect = 4e-17 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC----AAAG 81701 |||| | |||||||| |||||||| ||||| || ||||| | ||||| ||| ||| Sbjct 13923 AGTAGACTCCTTCTGAATATTATAGTCAGACAGGGTTCTTCCATCTTCCAACCAGCAAAA 13982 Query 81702 ATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTT 81761 || || | ||||||| |||| ||||| ||||||| ||||| ||||||||||| | ||| Sbjct 13983 ATGAGACGTTGTTGATCTGGTGGTATTCCTTCCTTGTCTTGGATCTTTGCTTTAACGTTT 14042 Query 81762 TCAATCGTATTAC 81774 ||||| | || || Sbjct 14043 TCAATAGCATCAC 14055 >seq2234 Length=154088 Score = 104 bits (114), Expect = 4e-17 Identities = 107/142 (75%), Gaps = 11/142 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC------ 81697 |||||| | |||||||| |||||||| ||||| || ||||| | ||||| ||| Sbjct 13437 AGAGTAGACTCCTTCTGAATATTATAGTCAGACAGGGTTCTTCCATCTTCCAACTGTTTA 13378 Query 81698 -----AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||||| || | ||||||| |||| ||||| ||||||| ||||| ||||||||| Sbjct 13377 CCAGCAAAGATGAGACGTTGTTGATCTGGTGGTATTCCTTCCTTGTCTTGGATCTTTGCT 13318 Query 81753 TTTATATTTTCAATCGTATTAC 81774 || | |||||||| |||| || Sbjct 13317 TTAACGTTTTCAATAGTATCAC 13296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901375859736960