Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq38288 134 3e-26 seq8748 131 4e-25 seq4663 114 3e-20 seq15220 107 5e-18 seq5663 91.5 3e-13 >seq38288 Length=11396 Score = 134 bits (148), Expect = 3e-26 Identities = 325/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 131466 TGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGATA 131525 |||| || || |||| || |||||||||| | ||||| | ||| || |||||||| Sbjct 8208 TGTACAAAAAGGCTGTCGCTTCCTTCTGGACGGCAGAAGAAGTGGATTTGTCCAAAGATG 8149 Query 131526 TTGATGATTGGGAAAAATTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGTTCTTGCAT 131585 | |||||||||| ||||||| || || ||||| ||||| | ||||| || | Sbjct 8148 GGGGAGATTGGGAAAGATTAACCCCCGATAAATGGCATTTTCTTTCCCATGTTCTGGCCT 8089 Query 131586 TCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAA 131645 | || |||| |||||||| ||||| ||||||||| | || ||| || ||| Sbjct 8088 TTTTTGCCGCCAGTGATGGTATTGTAATTGAAAATTTAGTGGAACGCTTCGCTCGCGAAG 8029 Query 131646 TTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCATA 131705 | | | | ||||| | || || ||||| || ||||| ||| ||| Sbjct 8028 TCAAAGTGACCGAAGTTCGTTGCTTTTATGGCTTTCAGATTGCCATTGAAAATATACATT 7969 Query 131706 GCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAAT 131765 || ||||| || ||||||||| || || | || | | || |||||||||| Sbjct 7968 CAGAAATGTACAGCTTGCTGATTGAGATCCTCATTTGAGATCATCAAGAAAAAAATAAAT 7909 Query 131766 TATTTGATGCTGTAAATAAA-TTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAA 131824 | ||| | || | | | |||||||| |||| || || ||||||||||| |||||| Sbjct 7908 TGTTTAACGCCATTGAAACCCTTTCCTGCT-TTAAGAAAAAGGCAGAATGGGC-ATTAAA 7851 Query 131825 -TGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGA 131883 ||||| ||| || || |||| | | | | | || || ||||| ||| || Sbjct 7850 TTGGATACAAAATCCATC------TTTTGCAAAACGGTTGGTGGCCTTTGCCGCTGTGGA 7797 Query 131884 AGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGAT 131943 ||| || || || |||||| | || | ||||| |||||| | ||||| || | ||| || Sbjct 7796 AGGAATCTTTTTCTCAGGTTCCTTTTCGGCTATTTTTTGGTTAAAGAAACGGGAATTAAT 7737 Query 131944 GCCTGGA 131950 ||||||| Sbjct 7736 GCCTGGA 7730 >seq8748 Length=68017 Score = 131 bits (144), Expect = 4e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 |||||||| ||| | || || |||||||||||||| ||||| ||| | || || | ||| Sbjct 34219 TTTGCTATTTATTTGGAGCCGTGGCATTCAGATATTTTTGACTTCCTGGATCT-CAAAAA 34161 Query 110817 AATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 | || ||| || |||||| |||| || || || ||||||||| | |||||| | || Sbjct 34160 GAACACAGGGAAAGAGGAACAACGAGCTCGGGACTTGTTTTATGCATTATGGATTCCTGA 34101 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 | ||||||||||||| ||| || | |||| |||||| | | |||||||| || || Sbjct 34100 TCTATTCATGAAACGAGTTGAAAAGAATGAAATGTGGAGTTTGATGTGTCCAGATGAATC 34041 Query 110936 TCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATA 110989 |||||||| | | |||||| |||| |||||| | | || ||||| || Sbjct 34040 ACCTGGTCTTCATACTTGCTATGGAGAAGAATTTGAACAATTATATGAAAAGTA 33987 Score = 118 bits (130), Expect = 3e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 110987 ATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAAT 111046 ||||||||||||||||| || | ||| || ||| ||| | ||||||| || Sbjct 33176 ATATGAAAAAGAAGGCAGATTCAGATGTCAAGTTGAAGCACAACGAGTTTGGTTTGCTAT 33117 Query 111047 CCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCG 111106 ||||||| ||||||||||| ||||| ||||| || || || || ||| | |||| | Sbjct 33116 TATTGAATCGCAAGTTGAAACCGGAACACCTTACATGTTATACAAGGATGCTTGTAATAG 33057 Query 111107 CAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 ||||| ||||||| |||||| ||||||||| ||| ||| |||||||| Sbjct 33056 GAAATCAAATCAAAAGAATTTGGGAACAATTCAGTGTAGCAATTTGTG 33009 >seq4663 Length=104512 Score = 114 bits (126), Expect = 3e-20 Identities = 156/215 (73%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGAT---GATTCCGCTAATTTT 131851 ||||| |||||||| || |||||| | |||||||| ||| | || || |||||| Sbjct 34729 ATTAAGAAGAAAGCTGACTGGGCTTTGAAATGGATACAATACCCGGAATC---TAATTTA 34673 Query 131852 TCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGT 131911 | || | | ||||| ||||||||||| ||||| ||||||||||| ||||| || | Sbjct 34672 CC-ACTCGTGTAGTAGCATTTGCTTGTGTAGAAGGAATATTCTTTTCGGGTGCATTTGCT 34614 Query 131912 GCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTC 131971 | ||||| ||| | ||||| |||||| ||||||||| || | || ||||| || | Sbjct 34613 TCAATCTTCTGGTTGAAGAATCGTGGACTGATGCCTGTCCTAACCTTCGCCAATGAACTT 34554 Query 131972 ATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 || |||||||||| | | || ||| ||||| Sbjct 34553 ATTAGCAGAGATGAAGGACTTCACTGTGATTTTGC 34519 >seq15220 Length=39705 Score = 107 bits (118), Expect = 5e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | || || || ||||||||||||||||||||| ||| | | ||| ||| Sbjct 12636 TTCAATCGTCAGCCTACATTGCATAAAATGTCTATGATGGGACATCGCATAAGAGTTTTA 12695 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 | | | ||||||||| | || | |||| || || |||||||| ||||||||| Sbjct 12696 CCCTGGTCCACATTTCGAATGAACCTGAGTGTAACAACACCATATAATGCTGATTTTGAT 12755 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||| | ||||| |||||||| Sbjct 12756 GGAGATGAAATGAATCTTCATGTTCCTCAATC 12787 >seq5663 Length=92856 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 131433 TATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCT 131492 ||||||| ||| | |||| || | | | ||||| |||||| ||| || | || | Sbjct 71803 TATTTCCTATTGAGTATCAGGACATCTGGCAAATGTACAAGAAAGCTGAAGCATCATTTT 71862 Query 131493 GGACTGTTGAAGAGATCGATATGACCAAAGATATTGAT-GATTGGGAAAAATTAACCTTG 131551 |||||| |||||| | || | | |||||| | ||| |||||||||||||||| | Sbjct 71863 GGACTGCTGAAGAAGTTGACTTATCAAAAGATCT-GATAGATTGGGAAAAATTAAAACCG 71921 Query 131552 AATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTT 131611 | ||||| ||||| | ||| | || | || || || || | |||||||||||||| Sbjct 71922 GAAGAAAAGCATTTTATCTCCCATATTTTAGCCTTTTTTGCTGCCAGTGATGGCATTGTG 71981 Query 131612 ATTGAAAATCTTGTTATTAATTTCATTCAAGAAATT 131647 | |||||| |||| || | ||| || | || ||||| Sbjct 71982 AATGAAAA-CTTGGTAATTATTACAGTTAA-AAATT 72015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184072124354796