Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_024785.1 Length=44844 Score E Sequences producing significant alignments: (Bits) Value seq1110 114 4e-21 seq100 91.5 4e-14 >seq1110 Length=205023 Score = 114 bits (126), Expect = 4e-21 Identities = 237/346 (68%), Gaps = 10/346 (3%) Strand=Plus/Minus Query 17418 CCACCAGCTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTA 17477 || ||||| || ||||| | ||||| ||||| || || ||| || || |||| Sbjct 28666 CCTCCAGCCTTATTCCAAACCCCAAATTGTTCGGCTGCTGCTGAATATTCACCCATATTT 28607 Query 17478 AGAAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGAT 17537 ||| || | ||| ||||| || |||| ||| | |||||||| || |||| |||| Sbjct 28606 AGATACTTTAATAATGTTGATGTTCTAAATGCATTTTCACCAATGTTATAAGTCAATGAT 28547 Query 17538 ACTAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTT 17597 || || || || || |||||||| | | || ||| |||||| | |||||| | Sbjct 28546 ACAAGGGCATCGAACTGATTTTGCTTTAATGAAACATTAACAAGCTGATTTACTGTACGC 28487 Query 17598 TCAAACTTAATTAAATCATGTTTGAAGTAGGTTTTTGCTT---GTTCAGATGTACATGTA 17654 | |||| | | ||||||||||| || || | |||||||| |||| || || || Sbjct 28486 TGAAACCTTAATAAATCATGTTGAAAATAAGCTTTTGCTTCACTTTCA---GTGCAGGTC 28430 Query 17655 TCGCCTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACC-TATGCCGATGGTCCA 17713 || ||| | |||||| | ||||| || || | ||||| || ||| || || ||||| Sbjct 28429 TCACCTCTTTTAACTCTCACTCCATTTGGATAAATCGTTGTTCCATAT-CCAATAGTCCA 28371 Query 17714 TACGCCAACACCATCATCATATGCAGTTAATCT-AGTTCCTTCAAA 17758 ||| | ||||||||||| | ||||||| || | ||||||| Sbjct 28370 AGTGCCTGCTCCATCATCATAAGATTTTAATCTCAGAT-CTTCAAA 28326 >seq100 Length=411593 Score = 91.5 bits (100), Expect = 4e-14 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 7078 CCATCACGCGCTTTAGCCACAATTATTTCGGCGATACCCTGATCTTTTGAGTTTTTATCA 7137 |||| |||| |||| | | || ||||| || | || ||||| || | ||| | | Sbjct 331848 CCATTACGCTGTTTACCAATGATGATTTCTGCTGTTCCAGCCTCTTTAGATTCTTTGTTA 331907 Query 7138 TAATACTCATCACGATATATAAACATGATCACATCTGCGTCCTCTTCAATAGATCCCGAC 7197 ||| |||||||||||| |||||||| |||| ||| || || | || || | ||| || Sbjct 331908 TAAACCTCATCACGATAAATAAACATAATCAAATCGGCATCTTGCTCGATCGCTCCAGAT 331967 Query 7198 TCACGAATGTCAGACATTAGAGGTCGTCTATCTTTTCTAGATTCTAAGCTTCGGCTTAAT 7257 ||||| | ||||||||||| |||||| | | | | | ||| | |||||| | | Sbjct 331968 TCACGCAAGTCAGACATTACTGGTCGTTTGTTTGGGCGATTTTCCAGACTTCGGTTGAGC 332027 Query 7258 TGCGCTAAACAAAAAACAGGACAATCAAATTCTTTTGCTA 7297 || | ||| || ||||| || | | ||||||||||| Sbjct 332028 TGAGATAATGCAATTACAGGGCAGTTCATTTCTTTTGCTA 332067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143072325139792