Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq5 102 9e-17 >seq5 Length=869209 Score = 102 bits (112), Expect = 9e-17 Identities = 206/305 (68%), Gaps = 3/305 (1%) Strand=Plus/Minus Query 141783 AATTTATCTTGATCTTCAAAGAATGAGTAATATAGTTCGCCTGACATTTCGTGAGGGCTA 141842 || || || |||||||||||||| | | ||| || || | || || ||||| Sbjct 711267 AACTTTTCCTGATCTTCAAAGAAGGCATCATACAGC---CCCGGCACATCAGAGGGGCTG 711211 Query 141843 AATAAAGTAATATAATCATTTTTACCAAGGCGTTCCATCATAAGGTCATTAATCTGAATT 141902 || || || ||||| |||| |||| ||||| | ||| ||| |||| ||| | Sbjct 711210 AACAAGGTGATATAGTCATCTTTAATCAGGCGCTGATACATCAGGCGGTTAAACTGCACG 711151 Query 141903 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATTTTTCAGAACTAAT 141962 || ||||||| ||| | | ||||| || || ||||| |||||||||||| || | Sbjct 711150 CCATAGTCCAGATGCCTTACCCGGTTCTCTTCTACACCGCGGTTATTTTTCAGTACCAGC 711091 Query 141963 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCGCCGCGAATA 142022 || || ||||| | ||||||| || || || || || ||||| || || | | Sbjct 711090 AGCGATTCCACTTCCAGATGCCACAAGGGGTAGAACAGGGTGGCGGCACCACCACGCACA 711031 Query 142023 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCT 142082 || ||||| || || ||||||||| || |||||||| || | || || ||| || Sbjct 711030 CCGCCTTGCGAGCAGCTTTTTACTGCGGTCTGGAAATGCTTATAAAACGGGATACAGCCA 710971 Query 142083 GTATG 142087 ||||| Sbjct 710970 GTATG 710966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534083619295680