Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2234 138 7e-28 seq9669 96.9 2e-15 seq2937 82.4 5e-11 >seq2234 Length=154088 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | | ||| |||| ||| ||||| |||||||| ||||| ||||| || Sbjct 12104 CCTCCTCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGAC 12045 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||| || || |||||||| ||||||||||||||| | || Sbjct 12044 AGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGA 11985 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||||| || || ||||| || | ||| || |||| ||| || Sbjct 11984 ATTCCTTCTTTGTCCTGGATTTT-TGCTTTAACATTTTCAATGGTATCACTTGGTTCGAC 11926 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||||||||||| || |||||||| || ||||| Sbjct 11925 TTCTAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| || | |||| || |||||| |||||||| || |||||||| || Sbjct 10964 CCTCCTCTCAGTCGGAGAACCAGGTGAAGAGTGGATTCTTTTTGGATATTGTAATCTGAA 10905 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || ||||| ||||| |||| | |||||||||| | || Sbjct 10904 AGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGG 10845 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| ||||| || ||| || |||| ||| || | ||||| || | ||||| Sbjct 10844 ATACCCTCTTTATCTTGAATCTTGGCCTTCA-CATTTTCGATTGTGTCACTAGGCTCCAC 10786 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| ||||| || || | || || ||||||||||||||| Sbjct 10785 TTCAAGAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATA 10737 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | || | ||||| || |||||| ||||| || || |||||||| || Sbjct 11193 ACCTCCTCTAAGTCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGA 11134 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||||||||||| || ||||| | |||||| ||| | || Sbjct 11133 CAGAGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGG 11074 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || ||||| ||||| |||| || | |||||||| | ||| | Sbjct 11073 GATGCCTTCTTTATCCTGGATTTT-TGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAA 11015 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||| || || || ||||| | || ||||| || || ||||| Sbjct 11014 CTTCTAACGTTATGGTCTTCCCTGTCAGAGTCTTTACGAATATTTGCAT 10966 Score = 107 bits (118), Expect = 1e-18 Identities = 170/240 (71%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || ||||| || | | || | ||| || || ||||||||| ||| Sbjct 12344 AAAATCTGCATCCCTCCTCTTAATCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATG 12285 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| || || || || | || || | ||||| || |||||||||| | ||| Sbjct 12284 TTGTAATCCGACAGGGTACGCCCATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGC 12225 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | |||||||| || |||||| ||||| |||| || | || || Sbjct 12224 TGATCTGGTGGAATGCCTTCTTTATCTTGAATTTT-TGTTTTGACATTTTCAATTGTATC 12166 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| ||| || || | ||||| || || || || | ||||| ||||| || ||||| Sbjct 12165 GCTTGGTTCTACTTCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAAATTTGCAT 12106 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | | || | ||| || ||| || ||||| |||||||| || || Sbjct 10737 ACCACCTCTGAGCCTGAGAACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCCGA 10678 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || |||||||||||||| ||||| ||||| || || |||||| | || Sbjct 10677 GAGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGG 10618 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| || | | |||| || | ||| || || | || | Sbjct 10617 AATTCCTTCTTTGTCCTGAATCTT-GGCCTTTACATTTTCAATGGTATCACTAGGCTCAA 10559 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||||| ||||| |||||||| Sbjct 10558 CCTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACAAAAATCTGCAT 10510 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || | ||||||||| ||||| || |||||||| || || || || || | || Sbjct 11405 AAGACTAGATGTAGAGTAGATTCTTTCTGAATGTTGTAGTCCGATAGAGTACGGCCATCT 11346 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | ||| || || ||||||||||||||||| || ||| | || | ||||||||| || Sbjct 11345 TCTAGTTGCTTACCAGCAAAAATCAAACGCTGTTGGTCTGGGGGAATACCTTCTTTATCT 11286 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||||| ||| | |||| || | |||||||| | ||| || | || || || Sbjct 11285 TGGATTTT-TGTCTTGACATTTTCTATTGTGTCGCTAGGTTCACTTTCTAAGGTTATGGT 11227 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||||| || ||||| ||||| || |||||| Sbjct 11226 CTTCCCTGTCAAAGTTTTGACAAATATTTGCATA 11193 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| | | || ||||||| || |||||||| ||||||||||| || Sbjct 11649 ACCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGA 11590 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || ||||| || || || |||||||| | | ||| |||||| | || Sbjct 11589 AAGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGG 11530 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | || || | || | ||||| || | || | Sbjct 11529 GATACCTTCTTTGTCTTGAATTTT-GGCTTTGACGTTTTCTATTGTGTCACTAGGCTCTA 11471 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || |||| ||||| || || || ||||| Sbjct 11470 CTTCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 11422 >seq9669 Length=62194 Score = 96.9 bits (106), Expect = 2e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||||||||||| || || |||||||||| ||| ||| ||||| |||||||| || | Sbjct 58793 CACCACCTCTCAGGCGCAAGACCAAATGTAAAGTAGACTCCTTTTGAATGTTGTAGTCAG 58734 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || ||| | || ||||| || ||||| |||||||| || | |||||||| | | Sbjct 58733 AAAGAGTTCGTCCTTCTTCCAACTGCTTTCCAGCAAAAATTAATCTTTGCTGATCAGGAG 58674 Query 33641 GCACACCT 33648 | | |||| Sbjct 58673 GAATACCT 58666 >seq2937 Length=135122 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||||||||||| ||||| || || || ||||| ||||| || ||||||||||| | Sbjct 15056 CACCACCTCTCAGACGTAGAACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCAG 14997 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | || ||| | || || | ||| ||||| |||||||| || || ||||| || | | Sbjct 14996 ACAACGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATTAATCGTTGCTGGTCAGGTG 14937 Query 33641 GCACACCT 33648 | | |||| Sbjct 14936 GAATACCT 14929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327981960165120