Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2234 122 2e-22 seq32926 87.8 4e-12 >seq2234 Length=154088 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || |||||||| |||||| | |||||||| | |||| Sbjct 10741 CAGATCTTTGTGAAGACTCTGACTGGAAAAACCATCACTCTTGAAGTGGAGCCTAGTGAC 10800 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| ||||| || ||| ||||||||||| ||||| || || || || || Sbjct 10801 ACAATCGAAAATGTGAAGGCCAAGATTCAAGATAAAGAGGGTATCCCACCAGATCAGCAG 10860 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || ||||||||| | |||||||| | ||| | | |||||||| || Sbjct 10861 AGGCTGATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGTACTCTTTCAGATTACAATATC 10920 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || ||||| || ||||||||||| ||| | |||| Sbjct 10921 CAAAAAGAATCCACTCTTCACCTGGTTCTCCGACT 10955 Score = 116 bits (128), Expect = 9e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || || || || ||||| ||| | |||||| | ||| Sbjct 10981 AAGACTCTGACAGGGAAGACCATAACGTTAGAAGTTGAACCTAGCGACACAATAGAAAAT 11040 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || |||||||| || || ||| || ||| | ||||| Sbjct 11041 GTCAAAACAAAA-ATCCAGGATAAAGAAGGCATCCCTCCAGACCAGCAGAGATTGATCTT 11099 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| ||| | |||||||| | ||| || | |||||||| |||||||||| || Sbjct 11100 CGCCGGAAAACAGCTTGAAGATGGTCGTACTCTGTCTGATTACAATATCCAGAAAGAATC 11159 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| | ||| || ||||| || Sbjct 11160 CACTCTTCACTTGGTTCTGCGACTTAGA 11187 Score = 113 bits (124), Expect = 1e-19 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||||||| | ||| ||||||||||| ||||| | ||||||||||| || || Sbjct 13458 CGAAGTCTCAAAACCAAGTGTAGAGTAGACTCCTTCTGAATATTATAGTCAGACAGGGTT 13399 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||| ||| || || || ||||| || ||||||||| Sbjct 13398 CTTCCATCTTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGA 13354 Score = 107 bits (118), Expect = 5e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| ||||| |||||||| || | ||||||| | ||| Sbjct 11437 AAAACCCTAACTGGCAAAACCATCACCTTGGAAGTAGAGCCTAGTGACACAATAGAAAAC 11496 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| || || || || || || || || Sbjct 11497 GTCAAAGCCAAA-ATTCAAGACAAAGAAGGTATCCCCCCAGATCAACAGAGGCTAATTTT 11555 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||||||||||||||| | ||| | | ||||||||| |||| ||||| || Sbjct 11556 TGCTGGTAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAACATCCAAAAAGAATC 11615 Query 206364 TACTCTTCACCTTGTTTTGAG 206384 ||| | || | ||| |||| Sbjct 11616 TACATTACATTTAGTTCTGAG 11636 Score = 105 bits (116), Expect = 2e-17 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| ||||| || ||||| || ||||| ||| || ||| | ||| Sbjct 12121 AAAACCCTCACTGGAAAGACCATCACCTTAGAAGTAGAACCAAGCGATACAATTGAAAAT 12180 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| |||||||| |||||||| ||| || || ||||| || || || Sbjct 12181 GTCAAAACAAAA-ATTCAAGATAAAGAAGGCATTCCACCAGATCAGCAAAGGCTGATTTT 12239 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || ||| | |||||||| | || || | ||||||||| |||| |||||||| Sbjct 12240 TGCTGGTAAACAGCTTGAAGATGGGCGTACCCTGTCGGATTACAACATCCAAAAAGAGTC 12299 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||| || || || ||| | ||| Sbjct 12300 TACACTCCATCTAGTTCTCAGA 12321 Score = 105 bits (116), Expect = 2e-17 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 206246 TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCG 206305 ||||||||| ||| ||||| || |||||||| || || ||| | || ||||| | Sbjct 13315 TAAAGCAAA-GATCCAAGACAAGGAAGGAATACCACCAGATCAACAACGTCTCATCTTTG 13373 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 | || || ||||||||||||||||| || || | || || || | ||||| ||||||| Sbjct 13374 CTGGTAAACAGTTGGAAGATGGAAGAACCCTGTCTGACTATAATATTCAGAAGGAGTCTA 13433 Query 206366 CTCTTCACCTTGTTTTGAGACTTCG 206390 |||| ||| | |||||||||||||| Sbjct 13434 CTCTACACTTGGTTTTGAGACTTCG 13458 Score = 100 bits (110), Expect = 7e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| ||||| || || || |||||| | || || || Sbjct 10507 AAAATG---CAGATTTTTGTGAAAACTCTCACCGGCAAGACCATCACTCTAGAGGTTGAG 10563 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 | ||| || | ||| |||||| |||||||| || |||||||||||| || Sbjct 10564 CCTAGTGATACCATTGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCA 10623 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||| || | ||||| || ||||| || |||||||||||||| || | | || Sbjct 10624 GATCAACAACGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTCTCGGAC 10683 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 |||||| | || || || || || ||||| || ||| | || || Sbjct 10684 TACAACATTCAAAAGGAATCCACACTTCATCTAGTTCTCAGGCT 10727 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||||| || ||| | ||||||||| || |||||||||| ||| || |||| || ||| Sbjct 11187 TCTAAGTCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGACAGAGT 11128 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | |||||||| ||||| |||||||||||||| Sbjct 11127 ACGACCATCTTCAAGCTGTTTTCCGGCGAAGAT 11095 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 206179 TTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || ||||| ||||| || || || ||||| ||| ||| || | Sbjct 11886 TTTTGTAAAGACTCTAACAGGTAAAACAATTACATTAGAAGTCGAACCAAGTGATACCAT 11945 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| || ||||||||| || || || |||||||||||| || || || | Sbjct 11946 TGAAAATGTTAAAGCAAAA-ATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGCGTT 12004 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || || || || ||||| | |||||||| | ||| || | ||||| ||| | || | Sbjct 12005 TAATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTGTCGGATTATAACATTCAAA 12064 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 |||| |||||||| || || ||||| ||||| Sbjct 12065 AAGAATCTACTCTGCATCTGGTTTTAAGACT 12095 >seq32926 Length=14205 Score = 87.8 bits (96), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 9/219 (4%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| |||||| || ||||||||||| || || | ||||| || ||| Sbjct 14110 CAGATATTCGTCAAAACTCTAACAGGAAAAACAATTACACTAGAAGTCGAGCCCAGTGAT 14051 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 | | ||| || |||||||| ||| ||||| || |||||||| || || || Sbjct 14050 GCTATTGAAAACGTTAAAGCAAA-GATCCAAGACAAGGAAGGAATACCACCAGATCAACA 13992 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || || || || |||||||||||||| || || | || || || | Sbjct 13991 ACGTCTCATTTTTGCTGG-------TTGGAAGATGGAAGAACCCTGTCTGACTATAATAT 13939 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||| | ||| | |||||||||||||| Sbjct 13938 TCAGAAGGAGTCTACTGTACACTTGGTTTTGAGACTTCG 13900 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/105 (77%), Gaps = 7/105 (7%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||||||| | ||| | ||||||||| ||||| | ||||||||||| || || Sbjct 13900 CGAAGTCTCAAAACCAAGTGTACAGTAGACTCCTTCTGAATATTATAGTCAGACAGGGTT 13959 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||| || || || || || ||||||||| Sbjct 13960 CTTCCATCTTCCA-------ACCAGCAAAAATGAGACGTTGTTGA 13997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179091652249356