Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_025417.1 Length=140903 Score E Sequences producing significant alignments: (Bits) Value seq57423 104 2e-17 seq5373 95.1 1e-14 >seq57423 Length=6334 Score = 104 bits (114), Expect = 2e-17 Identities = 218/316 (69%), Gaps = 13/316 (4%) Strand=Plus/Minus Query 136727 CCTGATAGTGGAGACCCTGTTAAAATTATTTGCGGAGACCCTGATGCAGACACTGAATAT 136786 ||||| ||| || || || |||||||| || || || ||||||||||| || ||| Sbjct 5788 CCTGACTCTGGTGATCCAGTGAAAATTATCTGTGGTGATCCTGATGCAGAG-CTAGATAG 5730 Query 136787 GAACG----TAAAGGTGCAGTAGAAGTGCTT-TGGGATACATTTGGAGGTACTGAAACTG 136841 || |||||||||||| | | || || ||||| | ||||| || || ||||| Sbjct 5729 CCCCGCTTATAAAGGTGCAGT-GCAATGTTTATGGGAAATTTTTGGCGGCACGGAAACAA 5671 Query 136842 AAAAAGGGTACAAAGTATTAGATGAACATGTAGGATTAATTTATGGAGACTCTATTA-AC 136900 |||| || |||||| | | || | ||| || ||||| ||||| ||||| |||| | Sbjct 5670 CTCAAGGCTATAAAGTACTCAACGAGCGTGTTGGTTTAATCTATGGTGACTCGATTACTC 5611 Query 136901 TATGAACGTGCTCAACAAATTTGTGAAGGATTAAAAGAAAAAGGTTTTGCAAGTATTAAT 136960 || |||||||| ||| | || | |||| || ||| ||||| ||||| | |||| Sbjct 5610 TA-GAACGTGCGCAAAATATCTTAAAAGGCTTGGAAGCCAAAGGCTTTGCTTCGAATAAT 5552 Query 136961 GTTGTATTAGGTGTAGGTAGTTTCTCTTAC--CAATTTAATACTCGTGATACCCACGGGT 137018 | || || ||| | ||||| | | ||| | ||||| |||||||| ||| || | Sbjct 5551 CTAGTCTTTGGTATCGGTAGCTATACCTACAACTATTTA--ACTCGTGACACCTTTGGTT 5494 Query 137019 TTGCAATCAAAGCAAC 137034 |||| | ||||| || Sbjct 5493 TTGCCGTAAAAGCCAC 5478 >seq5373 Length=95907 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/229 (70%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 136727 CCTGATAGTGGAGACCCTGTTAAAATTATTTGCGGAGACCCTGATGCAGACACTGAATAT 136786 ||||| ||| || ||||| |||||||| || || || ||||| ||||| || ||| Sbjct 19995 CCTGACTCTGGTGATCCTGTGAAAATTATCTGTGGCGATCCTGAAGCAGAG-CTAGATAG 20053 Query 136787 GAACG----TAAAGGTGCAGTAGAAGTGCTT-TGGGATACATTTGGAGGTACTGAAACTG 136841 || |||||||||||| | | || || ||||| | ||||| || || ||||| | Sbjct 20054 TCCCGCTTATAAAGGTGCAGT-GCAATGTTTATGGGAAATTTTTGGCGGCACAGAAACAG 20112 Query 136842 AAAAAGGGTACAAAGTATTAGATGAACATGTAGGATTAATTTATGGAGACTCTATTAACT 136901 |||| || |||||| | |||| | ||| || || || ||||| ||||| |||| | Sbjct 20113 CTCAAGGCTATAAAGTACTGAATGAGCGTGTCGGTTTGATCTATGGTGACTCGATTACCC 20172 Query 136902 ATGAACGTGCTCAACAAATTTGTGAAGGATTAAAAGAAAAAGGTTTTGC 136950 |||||||| ||| | || | |||| || ||| ||||| ||||| Sbjct 20173 TAGAACGTGCACAAAATATCTTAAAAGGTTTGGAAGCCAAAGGCTTTGC 20221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449746056653280