Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq6372 167 2e-36 seq26 163 3e-35 seq163424 131 2e-25 >seq6372 Length=86001 Score = 167 bits (184), Expect = 2e-36 Identities = 338/497 (68%), Gaps = 36/497 (7%) Strand=Plus/Minus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTC-TCTCCACGAAGAA 142301 ||||| | |||||||||||| | ||||| | || ||||| | || || |||| ||||| Sbjct 39774 TTCGGCTACCAGATGCGTTTCGACCTGGCCGATGG-TTTCCCCATCGTCACCACCAAGAA 39716 Query 142302 GCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACAT 142361 | || ||| ||||||||| ||| || |||||||||||| | ||||| || ||||| Sbjct 39715 GTGCCACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTCCAGGGCGACACCAACAT 39656 Query 142362 CAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAA 142421 |||||| || | || || ||||| |||||||| || ||||| || | || ||||| Sbjct 39655 CAAGTACCTCAAGGACAACGGCGTCAGCATCTGGGACGAGTGGGCCGACGAGAACGGCAA 39596 Query 142422 CCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGA 142481 |||||| || ||||||||| | |||||| || | || | | ||| Sbjct 39595 CCTCGGCCCGGTCTACGGCTACCAGTGG----------CGCAGCTGGCCGGCGC------ 39552 Query 142482 TGACGTCACAGACGAACCGATCGATCAGATCCGC---CGGATCATTACTGACTTGAAGAA 142538 || | ||| | ||||| |||||| || | | || | ||| | || | Sbjct 39551 -----CCAACGGCGAGTCCATCGACCAGATCAGCAAGCTGGTCGAGA-TGATCCGCAGCA 39498 Query 142539 GTCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACAT 142598 || | || || |||| |||||| | || |||||||| || ||||| | || Sbjct 39497 --ACCCGGACTCGCGCCGTCTGATCGTCTCGGCCTGGAACCCGGCGCTGGTCGAGCAGAT 39440 Query 142599 GGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAG--AAGCGTCTG 142656 ||| || || || ||||| | ||||||| ||| |||||| ||| | ||| ||| Sbjct 39439 GGCGCTGCCGCCCTGTCATGCGCTGTTCCAGTTCTACGTCG--CCGACGGCAAG---CTG 39385 Query 142657 TCATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCT 142716 || |||||||| || ||||| ||||| ||| ||||||||||| || |||||||| || Sbjct 39384 TCCTGCCAGCTCTACCAGCGCTCGGCGGACATCTTCCTCGGCGTGCCCTTCAACATCGCC 39325 Query 142717 TCGTACGCGCTTCTCAC 142733 ||||| || || || Sbjct 39324 AGCTACGCCCTGCTGAC 39308 >seq26 Length=549101 Score = 163 bits (180), Expect = 3e-35 Identities = 168/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| || |||||||| ||| | ||||| ||||||| || | || |||| |||||| Sbjct 240182 TTCGGCCACCAGATGCGCTTCGACCTGGCCGAAGGCTTCCCGGTGCTGACCACCAAGAAG 240241 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 ||||| ||||||||||||||| |||||| ||||||||||| | ||||| || |||||| Sbjct 240242 CTGCACCTGAAGTCGATCATCCACGAACTGCTGTGGTTCCTGCAGGGCGACACCAACATC 240301 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 || || | || ||| ||| |||||||| || ||||| || | || ||| || Sbjct 240302 CGCTACCTGAAGGAACACGGCGTGCGCATCTGGGACGAGTGGGCCGACGAGAACGGCGAC 240361 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGA 142462 |||||||| ||||||||| | |||||| |||||| ||| Sbjct 240362 CTCGGACCGGTCTACGGCTACCAGTGGCGCTCCTGGCCGA 240401 >seq163424 Length=1083 Score = 131 bits (144), Expect = 2e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 || || ||||||||||| || ||||||| | |||||||| || | |||| |||||| Sbjct 786 TTTGGCCATCAGATGCGCTTTGATCTGGCCGAGGGCTTTCCGCTGGTGACCACCAAGAAG 845 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 ||||| ||||| |||||| ||| || |||||||| | | |||||||| |||||| Sbjct 846 TGTCATCTCAAGTCCATCATCCACGAGCTGCTGTGGTTTTTGCAGGGCGATACCAACATC 905 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 |||||| | || || |||| |||||||| || ||||| || | |||||| || Sbjct 906 CGGTATCTGAAGGAAAACGGCGTCTCCATCTGGGACGAGTGGGCAGACGAGAATGGCGAC 965 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGG 142449 || || || ||||| ||| | |||||| Sbjct 966 CTGGGGCCGGTCTATGGCTATCAGTGG 992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499371600327360