Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq50 138 3e-28 seq34866 109 1e-19 seq14 100 8e-17 seq164795 96.9 9e-16 seq4461 95.1 3e-15 >seq50 Length=481860 Score = 138 bits (152), Expect = 3e-28 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 233 ACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCAGC 292 |||||||| || ||||| || || ||||| ||| ||||||||||| || |||| |||| Sbjct 154954 ACGATTTCGGTGGTGTAACGCTCTACGCCTTGCTGATCCTGCCACTTACGGGTTTTCAGC 154895 Query 293 GCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGC 352 |||||| || ||||||| |||||| ||||| || | || ||| ||||||||||| Sbjct 154894 TTGCCTTCGATATACACCTTAGAGCCTTTACGCAGATATTCGCCGGCAATTTCTGCCAGA 154835 Query 353 TTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTA 412 | | || || || ||||||||||| |||| |||||| | || || || ||| Sbjct 154834 CGCTGGTAAATTACGACCCGGTGCCATTCGGTTTGCTCTTTCATTTCGCCGGTAGCTTTA 154775 Query 413 TCCTTCCAGGTTTCAGACGTGGCAAT 438 || |||||| ||||||| || ||||| Sbjct 154774 TCTTTCCAGCTTTCAGAGGTCGCAAT 154749 >seq34866 Length=13211 Score = 109 bits (120), Expect = 1e-19 Identities = 211/306 (69%), Gaps = 8/306 (3%) Strand=Plus/Plus Query 223 CATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCG 282 |||| | ||||||||||| || ||||| || ||| | || || ||| || || Sbjct 5638 CATGTCTACCACGATTTCTGTAGTGTATTTTTCTTGGCCTGATTGATCAGTCCATTTACG 5697 Query 283 CGTTTGCAGCGCGCCTTCAATGAACACCTTGCTG--CCTTTGCGCAGGTACTGGCTGGCG 340 |||||| | ||||| ||| ||| |||| || ||||| || ||||| | | || Sbjct 5698 CGTTTGTAAACGACCTTCGATGTACA-CTTG-TGAACCTTTACGAAGGTATTCACCAGCA 5755 Query 341 ATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCC 400 | |||||| || || || || | || || ||||||||||| || |||| | | | | Sbjct 5756 ACTTCTGCTAGTTTGCCAAATAACACGACACGGTGCCATTCAGTACGCTCTTGCATTTGC 5815 Query 401 CCTGTCTGCTTATCCTTCCAGGTTTCAGACGTGGCAAT--TGATAACTGCGCCACGCCGT 458 ||||| | ||||| |||||| | || | ||| ||||| ||||| | ||| ||||| | Sbjct 5816 CCTGTGTTTTTATCTTTCCAGCTATCTGTCGTAGCAATGCTGATA--TTCGCTACGCCAT 5873 Query 459 TGCCGTTCGGCAGCGTGCGGAATTCTGGATCGTTGCCTAAGTTGCCAATGATTTCTACTT 518 |||| || |||| || | ||||||||| | |||||| || |||| | |||| Sbjct 5874 TGCCATTAGGCATATAACGTACTTCTGGATCTTGGCCTAAATTACCAACCAAGATAACTT 5933 Query 519 TGTTCA 524 |||||| Sbjct 5934 TGTTCA 5939 >seq14 Length=669857 Score = 100 bits (110), Expect = 8e-17 Identities = 216/317 (68%), Gaps = 7/317 (2%) Strand=Plus/Plus Query 226 GCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGC-CTGGTCCTGCCACTTGCGCG 284 || || ||||||||| || || |||||||| ||| || ||| |||||||| ||||| | Sbjct 425338 GCGCAGCACGATTTCGGTCGTATAGCGATCCT-GCCCGCTCTGATCCTGCCATTTGCGGG 425396 Query 285 TTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTT 344 ||| ||| ||| || || | ||||||||||| |||||||| || || |||||| | Sbjct 425397 TTTCAAGCTGGCCCTCGATATAGACCTTGCTGCCCTTGCGCAGATATTGCTCGGCGATCT 425456 Query 345 CTGCCA---GCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCC 401 |||| ||| | ||| ||| | || |||||||| || ||| || ||| | Sbjct 425457 TGGCCAGCGGCTCGCTGAAAATGGCGACCGAATGCCATTCGGTGCGTTCCTTGCGCTCGC 425516 Query 402 CTGTCTGCTTATCCTTCCAGGTTTCAGACGTGGCAATTGATAACTGCGCCACGCCGTTGC 461 | | | | || ||||||||| || ||||| || | | | |||| | || Sbjct 425517 CCGAGTTCCGGTCGCGCCAGGTTTCCGAGGTGGCGATGCGCAGGTTCACCACCTTGCCGC 425576 Query 462 CGTTC-GGCAGCGTGCGGAATTCTGGATCGTTGCCTAAGTTGCCAATGATTTCTACTTTG 520 ||||| || ||| |||| | || |||||| ||| | |||||| | ||| || ||| Sbjct 425577 CGTTCTGGAAGC-TGCGCACCTCGGGATCGCGGCCGAGGTTGCCCACGATGATGACCTTG 425635 Query 521 TTCAGTGAACCGGCCAT 537 || | ||||| ||||| Sbjct 425636 TTGACCGAACCCGCCAT 425652 >seq164795 Length=1075 Score = 96.9 bits (106), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 217 GCCATTCATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCA 276 ||| | |||| | || | |||||| || ||||| || | | || ||| ||| || Sbjct 332 GCCCTGCATGTCGACGATGATTTCGGTGGTGTAACGCTTGATACCGTCCTTTTCC---CA 388 Query 277 CTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCT 336 || ||| || |||||| ||| || ||| |||||| || ||||||||||| | || Sbjct 389 CTCGCGGGTCTGCAGCTTGCCCTCGATGTACACCTGCGAACCCTTGCGCAGGTATTCGCC 448 Query 337 GGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTT 396 |||||| || || | ||| ||||| | | | ||||||||||| || || || || ||| Sbjct 449 GGCGATCTCGGCGACCTTGCCGAACAGGGCAACGCGGTGCCACTCGGTCTTCTCGACCTT 508 Query 397 CTCCCCTGTCTGCTTATCCTTCCA 420 || || |||||||| || |||| Sbjct 509 CTGACCGGTCTGCTTGTCGGTCCA 532 >seq4461 Length=107335 Score = 95.1 bits (104), Expect = 3e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 265 CTGGTCCTGCCACTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCG 324 || ||||||||||||||| || ||||||| ||| || | | | |||| ||| ||||| Sbjct 84010 CTTGTCCTGCCACTTGCGGGTATGCAGCGAGCCCTCGAGATAAATCTTGGAGCCCTTGCG 84069 Query 325 CAGGTACTGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGT 384 |||||| | | ||||||||| ||||| ||| ||| |||||||| ||||||||||| Sbjct 84070 CAGGTATTCACCGGCGATTTCCGCCAGGCGACCGTAGAAAACCACGCGATGCCATTCCGT 84129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135111799617016