Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_025446.1 Length=157308 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq51 104 2e-17 >seq5 Length=869209 Score = 114 bits (126), Expect = 1e-20 Identities = 283/419 (68%), Gaps = 14/419 (3%) Strand=Plus/Plus Query 4039 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 4098 || || ||||| || ||||| ||||| |||||||||||||| || ||||| || || || Sbjct 710762 CTGCCGACACCTATTATGTCGGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTA 710821 Query 4099 CTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGAT 4158 || || | ||||||| |||| || |||||||| || ||| ||||| | Sbjct 710822 CTGATTGAGTGTGGTGACAGCCTGGATTCGATCAATGCCACCTCCAGTGCCATTGTAAAA 710881 Query 4159 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGC 4218 || || || | ||||| || || || || | | || ||||| | | |||||| Sbjct 710882 TACGTGTCGCAGCGCGCAGGTATTGGTATTAACGCAGGCCGTATTCGCGCTTTAGGTAGC 710941 Query 4219 CCTATCCGAAAAGGTGAAATGGTGCACACAGGTCTGGTTCC--TTTCATAA--AATATCT 4274 || ||||| || || ||| | || || || ||| ||| ||| |||| | | | Sbjct 710942 CCAATCCGTAATGGCGAAGCCTTTCATACTGG-CTGTATCCCGTTTTATAAGCATTTCCA 711000 Query 4275 GACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAG-CAACTTGCT 4333 ||| ||| |||| ||||| ||||||||| | ||||| || | | || | || | Sbjct 711001 GAC---CGCAGTAAAAAGCTGCTCGCAAGGCGGTGTGCGTGGTGGTGCCGCCACCCTGTT 711057 Query 4334 ATATCCCTATCTGGCATTATCAATTTGATGAT-GTTG-TGGTCCTGAAGAACAACCGTGG 4391 || |||| | |||||| || | || || | || |||| ||||| || ||||| || Sbjct 711058 CTACCCCT-TGTGGCATCTGGAAGTGGA--ATCGCTGCTGGTACTGAAAAATAACCGCGG 711114 Query 4392 TCTTGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAACCGCGTCATGT 4450 | | ||||||||||| | | | | | | |||||||| | ||| | |||||| | |||| Sbjct 711115 TGTAGAAGAGAACCGGGTAAGGCATCTGGACTATGGCGTGCAGTTTAACCGCCTGATGT 711173 >seq51 Length=473680 Score = 104 bits (114), Expect = 2e-17 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 76788 TGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC 76847 ||||| ||| |||||||| |||||||||||| |||||||||||||||| |||||||||| Sbjct 469304 TGGTGGCCCCAGCTGGACTCGAACCAGCGACCGATCGATTATGAGTCGAGTGCTCTAACC 469245 Query 76848 -ACTGAGCTACGGGGCCAAAATTG 76870 ||||||||| |||||| ||||| Sbjct 469244 AACTGAGCTATGGGGCCTGAATTG 469221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502123785790080