Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_025830.1 Length=120938 Score E Sequences producing significant alignments: (Bits) Value seq100 98.7 8e-16 seq51 95.1 9e-15 seq69521 93.3 3e-14 seq16664 89.7 4e-13 seq95965 87.8 1e-12 seq76955 82.4 6e-11 >seq100 Length=411593 Score = 98.7 bits (108), Expect = 8e-16 Identities = 197/287 (69%), Gaps = 19/287 (7%) Strand=Plus/Plus Query 37925 GCGTAGAATACGTAATGGATCTTCAATAAATGCCTGTGATGTATGACGTA-ATGTTTTAA 37983 ||||| || ||| | ||||||||||||||| || | ||| |||||| | | |||| Sbjct 279445 GCGTAAAACACGAAGTGGATCTTCAATAAAAGCATCTGAGACATGACGAAGAATTTTTTG 279504 Query 37984 GTCCTAAG-TCAACCTGACCACCAAAAGGATCTATAATTTCACCACTCTCAACATCCATC 38042 || |||| ||| | ||||||||| | ||||| ||| | ||| | | ||||||| Sbjct 279505 GT--TAAGATCATCTTGACCACCATAGGGATCATAAATGTTTCCATTTT---CATCCATT 279559 Query 38043 GCCATGGAATTGATGGTTAGGTCTCTACGTGCCAAATCCTCTTCCA----GA--GTTACA 38096 ||||| | ||||||||| || || | |||| ||||| ||||| | || ||| | Sbjct 279560 GCCATTGCATTGATGGTGAGATCACGACGTATTAAATCTTCTTCTAATTTGACTGTTTTA 279619 Query 38097 TCTGGACTAAAGCATACCTCAAATCCTTTATGGCCTTCACCTGTTTTTCTTTCTGTGCGT 38156 || | | ||| | |||||| | || || | || | || | |||||| || Sbjct 279620 TCGGTATGAAA------TTGAAATCCATGATATCCCACGCCAGACTTACGTTCTGTACGC 279673 Query 38157 GCAAGAGCGTACTCTTCTCTTGTTTCTGGGTGAAGATAAACTGGAAA 38203 || ||||| || |||||| |||||| ||| |||||| | || || || Sbjct 279674 GCGAGAGCATATTCTTCTTTTGTTTTTGGATGAAGAAATACAGGGAA 279720 >seq51 Length=473680 Score = 95.1 bits (104), Expect = 9e-15 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 9584 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAACC 9643 |||||||||| |||||||| |||||||||||| | |||||||||||| |||||||||| Sbjct 469304 TGGTGGCCCCAGCTGGACTCGAACCAGCGACCGATCGATTATGAGTCGAGTGCTCTAACC 469245 Query 9644 -ACTGAGCTAAGGGGCC 9659 ||||||||| |||||| Sbjct 469244 AACTGAGCTATGGGGCC 469228 >seq69521 Length=5113 Score = 93.3 bits (102), Expect = 3e-14 Identities = 228/340 (67%), Gaps = 7/340 (2%) Strand=Plus/Minus Query 37935 CGTAATGGATCTTCAATAAATGCCTGTGATGTATGACGTAATGTTTTAAGTCCTAAGTCA 37994 || ||||||||||| ||||| || | || ||||||||| |||| || | | ||| Sbjct 2788 CGCAATGGATCTTCTATAAAGGCATCAGAGACATGACGTAAGATTTTCCGTTCAAGGTCT 2729 Query 37995 ACCTGACCACCAAAAGGATCTATA-ATTTCACCACTCTCAACATCCATCGCCATGGAATT 38053 |||||||| |||| || ||| | ||| | ||| ||||||||||| | ||| Sbjct 2728 TGTTGACCACCGTAAGGGTC-ATAGACAGTGCCATTTTCA---TCCATCGCCATTGCATT 2673 Query 38054 GATGGTTAGGTCTCTACGTGCCAAATCCTCTTCCAGAGTTACATCTGGACTAAAGCATAC 38113 || || || |||| ||| || ||||||||| || | ||| | | | | | Sbjct 2672 AATCGTGAGATCTCGACGAATCAGATCCTCTTCAAGTTTAACAGTGGTATCTGTGAAAAA 2613 Query 38114 CTCAAATCCTTTATGGCCTTCACCTGTTTTTCTTTCTGTGCGTGCAAGAGCGTACTCTTC 38173 | ||| || | || || |||||| ||| | || || || ||||| ||||| ||||| Sbjct 2612 TTGAAACCCATGATAACCGACACCTGATTTACGCTCAGTACGGGCAAGTGCGTATTCTTC 2553 Query 38174 TCTTGTTTCTGGGTG-AAGATAAACTGGAAAAGATGCGCCAACTTGTGTGAACCCTCTTT 38232 | |||||| ||| || |||| |||| |||||| | ||||| || | | ||| Sbjct 2552 TTTTGTTTTTGGATGTAAGA-AAACGGGAAAATCTTTTCCAACAGGTTGGTAGCCTTCAG 2494 Query 38233 TCAACATCTCTTCATGCGTAGCACCAACAACCACATAATC 38272 || | | ||| | ||||| |||||||| |||||||| Sbjct 2493 CTAATAATTGTTCTGGGGTAGCTCCAACAACTACATAATC 2454 >seq16664 Length=35616 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 60861 ATTCAGATAGGGGAGCCTTGGTGGTGGTATAATACTGCTACAAATTTACCTTGTGTGTAT 60920 || || ||||| ||||| |||||||||||||| | || ||||| |||||| | ||| Sbjct 13244 ATGCAAATAGGAGAGCCGTGGTGGTGGTATAACCAAGGTAGCAATTTGCCTTGTATCTAT 13185 Query 60921 GATTATACTACAAAAGCGCGTTTTAATGAAGAGACTGGATTGTATGCTCAAGACATGGGG 60980 |||||| | || ||| ||||||| ||| || || |||||||| | || |||| Sbjct 13184 GATTATCCGACTAAACTTGCCTTTAATGCAGATACGGGCTTGTATGCACCTGATCTGGGA 13125 Query 60981 ACAATTTATGA------CTTTAAGACCGGAACACCCTATGATGA 61018 ||||||||||| ||| || ||||| || |||||||| Sbjct 13124 ACAATTTATGAGGCAATGAATAAAACAGGAACGCCATATGATGA 13081 >seq95965 Length=2703 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 38130 CCTTCACCTGTTTTTCTTTCTGTGCGTGCAAGAGCGTACTCTTCTCTTGTTTCTGGGTGA 38189 |||| |||| ||||| || ||||| || || || || |||||| | ||| |||||| Sbjct 2057 CCTTGACCTTGTTTTCGCTCGGTGCGCGCCAGCGCATATTCTTCTTTACTTTGTGGGTGT 1998 Query 38190 AGATAAACTGGAAAAGATGCGCCAACTTGTGTGA-ACCCTCTTTTCAACATCTCTTCATG 38248 | | | || |||||| | ||||||||| ||| | ||| | | || | ||| | Sbjct 1997 AAAAATACCGGAAAATCTTTACCAACTTGT-TGATAACCTTGGCTGATCAGTTGTTCTGG 1939 Query 38249 CGTAGCACCAACAACCACATAATCACGGTCTGATATTTCACGACCTAACAATTTATCTCT 38308 ||| |||||||| |||||||| || || ||| | |||||||| | | ||||| Sbjct 1938 CGTGGCACCAACTACCACATAGTCGCGTTCTTTAACGTCACGACCAAGTAGGGCGTCTCT 1879 Query 38309 TACTGCGCCACCTACCAAGTATACCTTCAT 38338 ||||||||||| || || || |||| ||| Sbjct 1878 GACTGCGCCACCGACTAAATAAACCTGCAT 1849 >seq76955 Length=4939 Score = 82.4 bits (90), Expect = 6e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 9584 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAACC 9643 ||||||||||| | ||||||||| | |||| | |||||||||||| |||||||||| Sbjct 825 TGGTGGCCCCTCCCAGACTTGAACTGGGGACCTAACGATTATGAGTCGTGTGCTCTAACC 766 Query 9644 -ACTGAGCTAAGGGGCC 9659 |||||||||||||||| Sbjct 765 AACTGAGCTAAGGGGCC 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386026976265604