Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 120 4e-21 seq103 91.5 2e-12 >seq4 Length=924746 Score = 120 bits (132), Expect = 4e-21 Identities = 173/240 (72%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 2133598 TGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGG 2133657 ||||||||||||||||||||||||| |||||||||| ||||||| |||| | || | | Sbjct 781262 TGTGCGAGCACCACCTGCTGCCCTTCATCGGCAAGGTGCACGTGGCCTACATCCCGTCCG 781321 Query 2133658 GCAAGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCC 2133717 ||||| | | || ||| |||| || ||||||||| |||||||| | |||| | | Sbjct 781322 GCAAGGTGCTGGGACTGTCCAAGGTCGCGCGCATCGCCGACATGTACGCGCGCCGCCTGC 781381 Query 2133718 AAGTACAGGAGGCACTCACGCGCCAGATCGCCGAGAGCGTGAGCCAG---GTTACGGGCG 2133774 | | |||||| || || |||||||| || || | |||| || || | || Sbjct 781382 AGATCCAGGAGAACCTGACCAAGCAGATCGCGGA---CGCCATCCAGCGCGTCACCGACG 781438 Query 2133775 CGCGCGGCGTCGGCGTCGTCC-TCGAGGGCCTGCACATGTGCGTGTGTATGCGCGGCGTG 2133833 || ||||| |||| | || |||||| | |||||||||| || ||||| |||||| Sbjct 781439 CGAAAGGCGT-GGCGGTGACCATCGAGGCCAAGCACATGTGCATGATGATGCGAGGCGTG 781497 >seq103 Length=407632 Score = 91.5 bits (100), Expect = 2e-12 Identities = 140/188 (74%), Gaps = 10/188 (5%) Strand=Plus/Plus Query 2144677 GGGCATGGTCATGGCCAGCGACGCCTACTTTCCCTTTCCCGACGGCC-CGAGCAAGGCCA 2144735 |||| ||| ||||| ||||||| ||| || || | ||||||| ||| ||| ||| Sbjct 72097 GGGCGCGGTGATGGCGTCGGACGCCTTCTTCCCGTTCCGCGACGGCATCGA-CAATGCCG 72155 Query 2144736 TCGCCGGCGG-CGTCGTCGCCATCGTGCAGCCGGGCGGCTC-ACGCGGCGGCGACAAGCC 2144793 || ||||| | ||| ||||||| | |||||||||||||| | ||| | || | || Sbjct 72156 -CGAAGGCGGGCATCGCCGCCATCATCCAGCCGGGCGGCTCGATGCGT-GACGCCGAGGT 72213 Query 2144794 TCGATCGCCGTCTGC-GACGAGGCCGGCGTCGCCATGGTCTTTACCGGCATGCGCCATTT 2144852 ||| || | |||| ||||||||||| |||||||||| || || |||||||| || || Sbjct 72214 --GATTGCTG-CTGCCGACGAGGCCGGGATCGCCATGGTGTTCACGGGCATGCGGCAATT 72270 Query 2144853 CCGTCACT 2144860 ||| |||| Sbjct 72271 CCGGCACT 72278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7160427106526232