Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_026587.1 Length=86246 Score E Sequences producing significant alignments: (Bits) Value seq53614 488 3e-133 seq85907 226 2e-54 >seq53614 Length=7104 Score = 488 bits (540), Expect = 3e-133 Identities = 329/368 (89%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 8400 GCAGGCATAGCCACCCATCGCCAACTGCTGTACGCATATACAGCAATTCGGATAATGGGC 8459 || || |||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 6359 GCCGGTATAGCCACCCATCGACAACAACTGTACGCATATACAGCAATTCGGATAATGGGC 6418 Query 8460 TACCCACTACCCGGATTGCATATGCGCACGAAACCCTTCCGCCCGCCTCAGCGGCATGAG 8519 ||||||||||||||||||||||||| || |||||||||||||||||| | ||||||||| Sbjct 6419 TACCCACTACCCGGATTGCATATGCTCAAGAAACCCTTCCGCCCGCCGCGCCGGCATGAG 6478 Query 8520 ATCGCCGGCCTTCGCTACTACCGCACTGCCTCGGCCTACAACTGGCTCGGGATCACGATG 8579 ||||||||||| |||||||||||||| || || || |||||||||||||| | ||||| Sbjct 6479 ATCGCCGGCCTCCGCTACTACCGCACCGCGTCAGCTTACAACTGGCTCGGCGTAGCGATG 6538 Query 8580 GCGCACCCGACCCGAGCAATCCAGTTGCTGCTCGAACAGTGCGAGCCAGACGTGCTCTTG 8639 || || ||||||||||||||||||||||||||||| ||||| |||||||||||||| | | Sbjct 6539 GCCCATCCGACCCGAGCAATCCAGTTGCTGCTCGAGCAGTGTGAGCCAGACGTGCTTTCG 6598 Query 8640 CCGATGTTCAACATCGAGATCGACGCGATCCTGCGCCAGGCCGACGAGTACGCGAAAACC 8699 ||||||||| | || |||||||||||||||||||| |||||||| |||||||| || ||| Sbjct 6599 CCGATGTTCGAGATTGAGATCGACGCGATCCTGCGTCAGGCCGATGAGTACGCAAAGACC 6658 Query 8700 GGACAGGTGCTAGAGCGCGAGCAACTGCGCGAAATGCTCATGCACCTGATTTCCAAAGCA 8759 || || ||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 6659 GGCCAAGTGCTTGAGCGCGAGCAACTGCGCGAAATGCTCATGCACCTGATCGCCAAAGCG 6718 Query 8760 GCTGGCGA 8767 || ||||| Sbjct 6719 GCGGGCGA 6726 Score = 354 bits (392), Expect = 4e-93 Identities = 383/502 (76%), Gaps = 4/502 (1%) Strand=Plus/Plus Query 10650 TGGTGAGCGAGCAAGAGGGAGGTAATGATGTCAGCAATCATCAGTGAGTGCGGTAAATAT 10709 || |||||||||| |||||||| || ||||||||||||||||||||| ||||| ||| Sbjct 5847 TGCTGAGCGAGCATGAGGGAGGGAACGATGTCAGCAATCATCAGTGAATGCGGCCGGTAT 5906 Query 10710 CGGTACCGCCTGGATCGAGATTGTTCGCCACCCTTTGAGGGTAGCAAGGTGTACGCCTAC 10769 || ||||| ||||| ||||| || | | || |||||||| ||||| |||| ||| || Sbjct 5907 CGTTACCGACTGGAGCGAGAATGCTGCCTGCCTTTTGAGGGCAGCAAAGTGTTCGCATAT 5966 Query 10770 TTCGGTGTTAACCCCAGCACGGCGGATGCCAGTACAGACGATGCTACCGTCCGAAAGTGG 10829 || || || ||||| |||||||||||||||| || |||||||| || || || |||||| Sbjct 5967 TTTGGGGTCAACCCAAGCACGGCGGATGCCAATATTGACGATGCGACGGTGCGCAAGTGG 6026 Query 10830 CGAGGCTTCACCGAGAGAAATGGAGGCCATAGGTTCATTGTGGGGAACGTCTTCTGCTAT 10889 ||||| ||||| | | |||||||| ||| | ||||| || || |||||||||||||| Sbjct 6027 CGAGGGTTCACTCTGCGCAATGGAGGTCATCGATTCATCGTCGGCAACGTCTTCTGCTAC 6086 Query 10890 CGTGCCACCGACGTGAAAGAGCTGCGAAAAGTGGACGACCCGTTTGGACCTGAAAGCGTG 10949 || || || |||||||||||||| || | ||| || || || ||||| |||| Sbjct 6087 CGCGCTACTGACGTGAAAGAGCTTCGCGGACAGGATGATCCTTTCGGACCACTTAGCGCC 6146 Query 10950 GATTACTTCCAGTCCATCCTGGCGGAAGCTGACATCCTGGTACCGTGTTGGGGTAGCCTG 11009 || |||||| |||| | || || || ||||| ||||| || || ||||| ||||| Sbjct 6147 GACCACTTCCGCGCCATAGTCGCTGATGCCGACATTCTGGTTCCTTGCTGGGGAAGCCTT 6206 Query 11010 TCAAAGCTACC-CAAGCATCTTCGTGGGTGC-CCTCCTCAACTTCTTCAGTGGATGCTCC 11067 || || | || | || |||| ||| ||||| ||| |||| |||||||| ||| || ||| Sbjct 6207 TCGAAAATGCCGCGAG-ATCTGCGT-GGTGCTCCTGCTCAGCTTCTTCAATGGCTGATCC 6264 Query 11068 GCTCTGGTAAGCCTGTCATGTGCTTCGGGCTCACCCGGTGTGATCAACCAAAGCACCCCC 11127 | || || ||||| || ||||||||||| |||| || | || ||||||||||| | Sbjct 6265 GATCAGGAAAGCCGGTAATGTGCTTCGGAATCACTGCCTGCGGACAGCCAAAGCACCCTC 6324 Query 11128 TTATGCTGGGGTACGACACTCC 11149 | ||||| || |||||||| || Sbjct 6325 TGATGCTTGGATACGACACACC 6346 Score = 226 bits (250), Expect = 2e-54 Identities = 158/180 (88%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 9555 CCATGCCCCTATTGCCGAGGCTATGACCTAGAGCGTCGCTGGTGTCACGTTTGCAATGGC 9614 |||||||||||||||||||||||| |||| || || |||||||| ||||| |||| |||| Sbjct 6920 CCATGCCCCTATTGCCGAGGCTATAACCTCGAACGGCGCTGGTGCCACGTATGCAGTGGC 6979 Query 9615 AGTGGCGTCGTTGATGTCAAGGCTCAACAGCGAGAGCGCGCAGAGATTGTAAAGGCGCTG 9674 | ||||||||||| ||||||||||||||| | ||||||||||| | ||| |||| Sbjct 6980 CGAGGCGTCGTTGACGTCAAGGCTCAACAGACGGCACGCGCAGAGATGTTGAAGCTGCTG 7039 Query 9675 CGCGAAGCCGGAATTGAAGTGAGGGACTGACCGTGCCTGACATGAGAGAAGATTTTGAAG 9734 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 7040 CGCGAAGCCGGCATTGAAGTGAGGGACTGACCGTGCCTGACATGAGAGAAGAGTTTGAAG 7099 Score = 156 bits (172), Expect = 2e-33 Identities = 143/181 (79%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 8888 AAATCAACGAATCCGACCCCCGGAGGACCCACCGTGGACAACAGAAACGAAACCCTGGTC 8947 ||| ||||| |||||||||| |||||||| |||||||||||| ||||||||| | | Sbjct 6738 AAACCAACGCATCCGACCCCTGGAGGACCAACCGTGGACAACGACAACGAAACCATATTG 6797 Query 8948 GCGCTACTGGTCATCGCGCTGATCGTCTTCGGCATCTTCCGGATAGTCGGGGACTTCCAG 9007 || | | ||||||| || ||||| | || ||||||||| | |||||||| | ||| Sbjct 6798 GCAGTGATAGTCATCGTTCTCTTCGTCCTGGGAATCTTCCGGGTCGTCGGGGATATGCAG 6857 Query 9008 AACCTCTACGAGCAGACAGAACAGAAAGGACAGGAGTTGAGCAGATGGAGCAAGCAGTGA 9067 | |||||| |||||| || ||||||||||||||||||||||||||||||| | ||| Sbjct 6858 GAACTCTACAGGCAGACCGAGTTGAAAGGACAGGAGTTGAGCAGATGGAGCAAGAACTGA 6917 Query 9068 A 9068 | Sbjct 6918 A 6918 >seq85907 Length=3443 Score = 226 bits (250), Expect = 2e-54 Identities = 158/180 (88%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 9555 CCATGCCCCTATTGCCGAGGCTATGACCTAGAGCGTCGCTGGTGTCACGTTTGCAATGGC 9614 |||||||||||||||||||||||| |||| || || |||||||| ||||| |||| |||| Sbjct 3340 CCATGCCCCTATTGCCGAGGCTATAACCTCGAACGGCGCTGGTGCCACGTATGCAGTGGC 3281 Query 9615 AGTGGCGTCGTTGATGTCAAGGCTCAACAGCGAGAGCGCGCAGAGATTGTAAAGGCGCTG 9674 | ||||||||||| ||||||||||||||| | ||||||||||| | ||| |||| Sbjct 3280 CGAGGCGTCGTTGACGTCAAGGCTCAACAGACGGCACGCGCAGAGATGTTGAAGCTGCTG 3221 Query 9675 CGCGAAGCCGGAATTGAAGTGAGGGACTGACCGTGCCTGACATGAGAGAAGATTTTGAAG 9734 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3220 CGCGAAGCCGGCATTGAAGTGAGGGACTGACCGTGCCTGACATGAGAGAAGAGTTTGAAG 3161 Score = 98.7 bits (108), Expect = 5e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 8970 TCGTCTTCGGCATCTTCCGGATAGTCGGGGACTTCCAGAACCTCTACGAGCAGACAGAAC 9029 ||||| | || ||||||||| | |||||||| | ||| | |||||| |||||| || Sbjct 3440 TCGTCCTGGGAATCTTCCGGGTCGTCGGGGATATGCAGGAACTCTACAGGCAGACCGAGT 3381 Query 9030 AGAAAGGACAGGAGTTGAGCAGATGGAGCAAGCAGTGAA 9068 ||||||||||||||||||||||||||||||| | |||| Sbjct 3380 TGAAAGGACAGGAGTTGAGCAGATGGAGCAAGAACTGAA 3342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 275256433410772