Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq44802 120 1e-22 seq103 118 4e-22 seq1 86.0 2e-12 >seq44802 Length=9265 Score = 120 bits (132), Expect = 1e-22 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 36805 CGCCCCGCCGTCGAGGCCGAGGAGAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAG 36864 ||||| || |||||||| | ||||||||||| | ||| ||||||| | ||| | ||||| Sbjct 274 CGCCCGGCGGTCGAGGCGGGCGAGAAGCTCGGTTTCCTCCCCGGCGACCTCGCACAGAAG 215 Query 36865 ATGGCTCCGTACCTGATCCCGATGCTGGACGCGGTGATCGACCTGGTTGGCC-CGA--CG 36921 || | || || ||| |||| | |||||| || ||| || | ||| ||| | Sbjct 214 ATCGACCCTTATCTGCGCCCGCTCTACGACGCGCTGTACGAAATGCTCGGCTTCGAAACC 155 Query 36922 ATGGCCAAGCGCCTGCAGGAGACCCGCCAGCTCGAGATCGCCCCGCTGGCCTACATGCGA 36981 ||||||||| || |||| | | |||||||||||||||||||||||||||| Sbjct 154 GTGGCCAAGC---TGATCGAGAAACAGGTGATCGAGATCGCCCCGCTGGCCTACATGCGC 98 Query 36982 GGCCGAACCTTCAACGACACGTTCCTCATCGCCGACGAGATGCAGAACGCCAC 37034 ||||| || | ||| ||| ||| |||| |||||||| |||||| |||| Sbjct 97 GGCCGCACTCTTAACAACAGCTTCATCATTCTCGACGAGAGTCAGAACACCAC 45 >seq103 Length=407632 Score = 118 bits (130), Expect = 4e-22 Identities = 229/330 (69%), Gaps = 15/330 (5%) Strand=Plus/Plus Query 36805 CGCCCCGCCGTCGAGGCCGAGGAGAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAG 36864 ||||| || || ||||||| ||||||||||||| ||||||||||| | | |||||| Sbjct 107796 CGCCCGGCGGTGGAGGCCGGCGAGAAGCTCGGCTTCCTGCCCGGCGACCTGTCGGAGAAG 107855 Query 36865 ATGGCTCCGTACCTGATCCCGATGCTGGACGCGGTGATCGACCTGGTTGGCC-CGACGA- 36922 || ||| |||||| |||| | |||||| | ||| || | ||| |||| Sbjct 107856 ATCAATCCCTACCTGCGCCCGCTCTACGACGCGCTCTACGAAATGCTCGGCTTCGACCGC 107915 Query 36923 -TGGCCAAGCGCCTGCAGGAGACCCGCCAGCT---CGAGATCGCCCCGCTGGCCTACATG 36978 ||||||||| || ||| |||||| | |||| |||| ||||||||||||||| Sbjct 107916 GTGGCCAAGC---TGATCGAG---CGCCAGGTGATCGAGGTCGCGCCGCTGGCCTACATG 107969 Query 36979 CGAGGCCGAACCTTCAACGACACGTTCCTCATCGCCGACGAGATGCAGAACGCCAC-CCC 37037 || || || || ||||| | | ||| ||||| ||||||| |||||| |||| ||| Sbjct 107970 CGCGGGCGCACGCTCAACCATGCCTTCATCATCCTCGACGAGGGTCAGAACACCACGCCC 108029 Query 37038 GCGACAGGCCGCGCTGCTGGTGACCCGCCTGGGCTTCGGAACGCGGGCCGTCTTGAACGG 37097 | | ||| | || | |||||||||| |||| ||| | ||| || | | ||| Sbjct 108030 GAG-CAGATGAAGATGTTCCTGACCCGCCTCGGCTACGGCTCCAAGGCGGTGATCACCGG 108088 Query 37098 TGACCCGGCCCAGTGCGACCTCCCG-GCGG 37126 ||| ||||| |||||| ||| |||| Sbjct 108089 CGACATCACCCAGGTCGACCTGCCGCGCGG 108118 >seq1 Length=1655743 Score = 86.0 bits (94), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 4529 CTGATCGTG---GACGAGTCGTCCATGGTCGACGAGTCGGTCGGTGAAGACCTCCTGTCG 4585 ||||||||| |||||| ||| ||||||| |||| | | | ||||| || Sbjct 176633 CTGATCGTGCTCGACGAGGTGTCGATGGTCGGCGAGGAGATGGCGCGCGACCTGATGAGC 176574 Query 4586 TTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCGGTGGCCGGGGCT 4645 ||||| ||| ||||||| || ||||| || | |||| |||||||| | ||||||| Sbjct 176573 TTCGGCAAGCCGATCCTCGTGCTCGGCGATCCTGGCCAGTTGCCGCCGAT--CCGGGGCG 176516 Query 4646 --GGATTCTTCACCAAGCAGAAGGCCGACTTCCTGCTGACCGACATCCACCGCCAGGCCC 4703 || ||||||| | || | ||| | |||||||||| ||||||||||||||| Sbjct 176515 AAGGCGCCTTCACCCGCGACGAGCCGGACGTGATGCTGACCGAGATCCACCGCCAGGCCG 176456 Query 4704 GCGACAACCCCATCAT 4719 ||| | | ||||||| Sbjct 176455 CCGAGAGCGCCATCAT 176440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180409840156968