Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq103 107 2e-18 seq6372 102 1e-16 >seq103 Length=407632 Score = 107 bits (118), Expect = 2e-18 Identities = 208/306 (68%), Gaps = 6/306 (2%) Strand=Plus/Plus Query 141289 CAGGTTGGCGCGGATTTCCCGGTATTCCTTGACGCACAAAACCGCGAACA---CGCACTC 141345 ||||| ||| ||| || ||||| ||||| | | | | | |||| | ||| || Sbjct 283788 CAGGTCGGCAAGGACTTTCCGGTGTTCCTGCATCCCGACACCGGCGAGGAGTACGCGCTG 283847 Query 141346 GCCCGGATCGAACGCAAGATCGGCGAAGGCTACAAGGGATTCGAATGCGCCTTTGACACG 141405 || || | ||| ||||||| |||| |||||| | |||||| |||| ||| || Sbjct 283848 GCGCGCACCGAGCGCAAGAGCGGCAGCGGCTACCACGGATTCATCTGCGACTTCACGCCG 283907 Query 141406 TCGATCACCATCGAACAAGACCTGATGCGCCGCGATCTTACCATCAACGCCATGGCAATG 141465 || | || | || |||||||| |||||||| || ||||||||||||||||| | Sbjct 283908 GCGGTGACGCTGGAGGAAGACCTGCAACGCCGCGACCTGACCATCAACGCCATGGCCGAG 283967 Query 141466 TTTATGGATGGTCAAGTCATCGATCCGTTCGGCGGCATGGACGATCTGAAAAACAAGGTG 141525 ||||| | |||||||| || | |||||||| | | || || || ||| Sbjct 283968 ACCGCCGATGGCGAGGTCATCGACCCCTGCGGCGGCAGGCAGGACCTCGCCGACCGCGTG 284027 Query 141526 CTTCGCCACGTCAATGCGGAAACCTTCAAGGAAGACCCGCTTCGCGTGCTGCGCGTTGCC 141585 || || ||||| ||| ||||| || |||||||| |||||||||||||| ||| Sbjct 284028 CTCCGGCACGTGTCGCCGG---CCTTCGTCGAGGACCCGCTGCGCGTGCTGCGCGTGGCC 284084 Query 141586 CGTTTC 141591 || ||| Sbjct 284085 CGCTTC 284090 >seq6372 Length=86001 Score = 102 bits (112), Expect = 1e-16 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 176465 CAAGCCGCATTCCAGCGCGATCAGATGTGTCAGGAGTGCGTAAGAGGCGATGTTGAATGG 176524 || |||||| || |||| | || | ||||| || ||||| |||||||||||| || Sbjct 39280 CAGGCCGCAGACCTGCGCCACCATCAGCGTCAGCAGGGCGTAGCTGGCGATGTTGAAGGG 39339 Query 176525 AAGCCCCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTCCCGTTGCG 176584 | || | ||||| |||| | || ||||| | |||||||||| || |||| | Sbjct 39340 CACGCCGAGGAAGATGTCCGCCGAGCGCTGGTAGAGCTGGCAGGACAGCTTGCCGTCGGC 39399 Query 176585 GACATAGAACTGGAA-ACCGTAGTGACACGGCGGCAAAGCCATTAGATCGACC-GCCCCG 176642 ||| ||||||||||| | || | ||||| ||||||| ||||| | |||||| || ||| Sbjct 39400 GACGTAGAACTGGAACAGCGCA-TGACAGGGCGGCAGCGCCATCTGCTCGACCAGCGCCG 39458 Query 176643 ACATTCCAAGCCGAGACCATATGACGACG 176671 ||||| |||||||| || |||| || Sbjct 39459 -GGTTCCAGGCCGAGACGATCAGACGGCG 39486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621511803200160