Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq11269 161 2e-35 >seq11269 Length=54388 Score = 161 bits (178), Expect = 2e-35 Identities = 292/429 (68%), Gaps = 36/429 (8%) Strand=Plus/Plus Query 25346 TTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGACG 25405 ||| || || |||||||| || |||| ||| || || || || || ||||| || || || Sbjct 43124 TTCAACGATCCGCTCGGCCTCGTCCTGGTCGTATATGCCGGCGAACCCGAACGCGAGGCG 43183 Query 25406 GGCACACTGAATCATGGCTTTATGCCGTAACATCCGTTTGGGATGCGACTGCCACGGTCC 25465 || ||||||||||| || || || || ||||| || || || ||||||||||| || Sbjct 43184 TGCGCACTGAATCATTGCCTTGTGGCGCAACATGCGCTTCGGGTGCGACTGCCATGG--- 43240 Query 25466 GGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCACTC 25525 || |||| ||| | || || || ||| |||| Sbjct 43241 --------------CT----GGGTGTTGC--GCTTA-------CACTCCGACATGTACTC 43273 Query 25526 GGTAACGCAGATCGGATGATTACGGTCCTTGCGGTAAATCCGGCATGTGCAG--GATTCA 25583 ||| | | | |||| || |||||||| || || | || ||||| ||| | | ||| Sbjct 43274 GGTGATGGTGGTCGGGTGCTTACGGTCTTTCCGATGGATTCGGCAGGTGTACTCGCTTCC 43333 Query 25584 TTGTCCTG----CTCAAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATACGGGA 25639 | | | ||| || ||||||||||| |||||| ||| ||| |||||||| || || Sbjct 43334 GTCAGCCGGCATCTCGAAATCCATGCCATCGAACTGCGGGTGTTCGTTGATGATCCGCGA 43393 Query 25640 CCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTGTCAGGGAAGGCGTAAAT 25699 |||||| || | ||| || ||||| || |||||||| | |||||| ||||||||||| | Sbjct 43394 CCAGCCGTCCAGGCCAACTACCGGCACAATGCCGTTGTTCTTGTCGGGGAAGGCGTACAA 43453 Query 25700 TTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAACAATGCGATGAACTG 25759 ||||| || | || || || |||||||| ||| ||||||| || || | | ||| Sbjct 43454 CTCTTTGGTGAAGGGGTTCAGCTTGTACTGGTCGGCTACGATCAGCAGGGCAACCATCTG 43513 Query 25760 CGCATCGCT 25768 ||| || || Sbjct 43514 CGCGTCACT 43522 Score = 105 bits (116), Expect = 2e-18 Identities = 416/645 (64%), Gaps = 41/645 (6%) Strand=Plus/Plus Query 827 TTTGGCTGGGTCAATAAAGGCTCCCGGCTGCGCCGCTTCAGGGAGGTGTATACCGAAATC 886 |||||||||||||| || | | || | |||| | ||| | |||| || || || Sbjct 12857 TTTGGCTGGGTCAAGAAGGACACCGGCAAGCGCAGGTTCCGCGAGGCCTACGAAGAGATT 12916 Query 887 CCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGTGTTGCCCTGTATTGTTTTGCCTGT 946 ||| | |||||||| |||||||| | ||| | | | || | || ||| Sbjct 12917 CCCAGGAAGAACGGGAAATCGGCCCGCCTTGCTGCACGAGGTATTTACTTGTTCGCCGCA 12976 Query 947 GATAACGAGTTTGGCGCGGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTGGGAA 1006 ||| ||||| || || || || |||||||| ||||| || ||||| ||||||| || Sbjct 12977 GATGGCGAGTCGGGAGCCGAGGTCTATTCCGGCGCCACCACCGAGAAGCAGGCGTTCGAG 13036 Query 1007 GTCTTTCGCCCGGCGCGACTGATGTGTAA-ACGC---ACACCCATGCTGACGGAAGCG-T 1061 || ||||||||||| | ||||| | | | || | | || || || || || | Sbjct 13037 GTATTTCGCCCGGCTTGGATGATGGCTCACAAGCTGGAGAACC----TG-CGCAACCGGT 13091 Query 1062 TCGGGATTGAGGTTAACGCCTCAAACATGAACCGT----CC-----------GGAGGATG 1106 |||| || ||| || | | | ||||| | || |||||| Sbjct 13092 TCGGCATCGAGCTTTCTGGAAATCAGAAGAACCCTGGCCCCATGTTCGTCATGGAGGACA 13151 Query 1107 GCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTGATGGTTCATCACCCCACTGTGCCG 1166 || ||| || || ||||||| |||||||| |||||| | ||||| |||| Sbjct 13152 TGTCGAAGTTCGAGACGGTGATCGGCAACCCCGGGGATGGTGCGAGTCCCCATGCTGCCC 13211 Query 1167 TGGTGGATGAATATCACGAGCACGCCACCGATGC---GCTTTATACCACGATGCTTACCG 1223 ||||||| || || ||||| |||| ||| || || | | |||||| ||| || | Sbjct 13212 TGGTGGACGAGTACCACGAACACGACACAGACGCCTTGGTGGATACCA---TGCAGACAG 13268 Query 1224 GGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGGGTACAACATTG 1283 | ||||| |||||| |||||| || ||| | ||| || || | |||| || | | Sbjct 13269 GCATGGGGGCGCGAGAACAGCCATTGCTGTCGATCATTACGACGTCGGGGTCAAATCTCG 13328 Query 1284 AGGGGCCGTGCTACGACAAGCGGCGGGGAGGTATCGAGATGCTCAACGGTTCGGTACCCA 1343 |||||| || ||||| ||||| |||| | ||| || ||| | || | | | Sbjct 13329 GGGGGCCATGTTACGAGAAGCGCCGGGACGTGATCCGCATTCTCGAGGGGCAGA---CGA 13385 Query 1344 ACGATGA-AC--TGTTCGGGATCATCTATACCGTTGACGAAGGCGATGACTGGACCGACC 1400 |||||| || | |||||||||||||| || | ||||| | ||| ||| |||| Sbjct 13386 TCGATGAGACGATCTTCGGGATCATCTACACGATCGACGAGGATGATTCGTGGGATGACC 13445 Query 1401 CG--CAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGT 1443 || ||| ||| || |||||||| ||| || |||||||| Sbjct 13446 CGGCCAG--CCTGATCAAGGCCAATCCGAATTACGGAGTGTCGGT 13488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122460535228232