Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_027340.1 Length=162160 Score E Sequences producing significant alignments: (Bits) Value seq5 122 9e-23 >seq5 Length=869209 Score = 122 bits (134), Expect = 9e-23 Identities = 250/369 (68%), Gaps = 2/369 (1%) Strand=Plus/Minus Query 58389 CGGTTGTTCTCAATACCACGGTTGTTCTTCAGCACGATCATGTCATCGAACTGGAAG-TG 58447 ||||| | || | ||| ||||| || ||||| || | || | || ||| || || Sbjct 711129 CGGTTCTCTTCTACACCGCGGTTATTTTTCAGTACCAGCA-GCGATTCCACTTCCAGATG 711071 Query 58448 CCACATCGGGTAATACATGGTTGCTGAGCCGCCACGGATACCACCCTGAGAACAGCTCTT 58507 ||||| ||||| ||| ||| || | || ||||| | ||| || || || ||||| || Sbjct 711070 CCACAAGGGGTAGAACAGGGTGGCGGCACCACCACGCACACCGCCTTGCGAGCAGCTTTT 711011 Query 58508 CAGATCACCAACGAACTTCTTGATGAACGGGATCGTACCGGTATGAGTCATCTCACCGTC 58567 | | ||| | ||| |||||||| || |||||| || || | Sbjct 711010 TACTGCGGTCTGGAAATGCTTATAAAACGGGATACAGCCAGTATGAAAGGCTTCGCCATT 710951 Query 58568 GCGGATAGAGGAACCCAGGGCACGGATAGCGCCGAAGTCAACACCGATACCAGCACGCTT 58627 ||||| | | ||| | || || ||| ||| || || ||| ||||| || |||| Sbjct 710950 ACGGATTGGGCTACCTAAAGCGCGAATACGGCCTGCGTTAATACCAATACCTGCGCGCTG 710891 Query 58628 AGACACGTATTTCACGATTGCGGTGCCAGTAGCAGTAATGCTGTCCAGGGTGTCACCAGA 58687 ||||||||||| || || || || || ||| | || |||||| |||||||| | Sbjct 710890 CGACACGTATTTTACAATGGCACTGGAGGTGGCATTGATCGAATCCAGGCTGTCACCACA 710831 Query 58688 CTTGATCAGGACACATGAGCTGAACTGACGGGTACGGGTACGCACGCCTGCCATGATAGG 58747 || ||||| || || ||||||||||||||||| ||||||||||||| | ||| ||||| Sbjct 710830 CTCAATCAGTACGCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCCGACATAATAGG 710771 Query 58748 TGTTGGGAG 58756 ||| || || Sbjct 710770 TGTCGGCAG 710762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517615205587200