Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq5 159 3e-34 seq51 104 2e-17 seq76955 87.8 2e-12 >seq5 Length=869209 Score = 159 bits (176), Expect = 3e-34 Identities = 284/408 (70%), Gaps = 10/408 (2%) Strand=Plus/Minus Query 14850 TGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGTTGTTCTTTAAT 14909 |||| || || || ||||| | | ||||| || |||||||| ||| || || | | Sbjct 711156 TGCACGCCATAGTCCAGATGCCTTACCCGGTTCTCTTCTACACCGCGGTTATTTTTCAGT 711097 Query 14910 ACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCA 14969 |||| || ||| || || |||||||||| || || | || || || ||||||||| Sbjct 711096 ACCAGCAGCGATTCCACTTCCAGATGCCACAAGGGGTAGAACAGGGTGGCGGCACCACCA 711037 Query 14970 CGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAAGGAATT 15029 || ||||||||||| || || ||||||||| ||||| ||||| || | || || || Sbjct 711036 CGCACACCGCCTTGCGAGCAGCTTTTTACTGCGGTCTGGAAATGCTTATAAAACGGGATA 710977 Query 15030 ACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCG 15089 ||||||||| |||||||||||| ||| ||| ||| ||||| || Sbjct 710976 CAGCCAGTATGAAAGGCTTCGCCATTACGGATTGGGCTACCTAAAGCGCGAATACGGCCT 710917 Query 15090 GCGTTGATGCCTATACCAGCTCGCTTGCTGATA--TACTTAATAAT---ACTGTTACTTG 15144 ||||| || || ||||| || ||| ||| || | || || | ||| |||| | || Sbjct 710916 GCGTTAATACCAATACCTGCGCGC-TGC-GACACGTATTTTACAATGGCACTG-GAGGTG 710860 Query 15145 CTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGAC 15204 ||||| || |||| ||| || ||| ||||| | ||| || || || ||||||| Sbjct 710859 --GCATTGATCGAATCCAGGCTGTCACCACACTCAATCAGTACGCAGGAGCTGAACTGAC 710802 Query 15205 GAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCT 15252 | || || ||||| | || | |||||| ||||| |||| |||||||| Sbjct 710801 GGGTTGGGGTACGCACGCCCGACATAATAGGTGTCGGCAGTGAAATCT 710754 >seq51 Length=473680 Score = 104 bits (114), Expect = 2e-17 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 103768 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 103827 |||||||||| |||||||| |||||||||||| | ||||||||||||| |||||||||| Sbjct 469304 TGGTGGCCCCAGCTGGACTCGAACCAGCGACCGATCGATTATGAGTCGAGTGCTCTAACC 469245 Query 103828 -ACTGAGCTAAGGGGCCGTAATTCTAT 103853 ||||||||| |||||| |||| ||| Sbjct 469244 AACTGAGCTATGGGGCCTGAATTGTAT 469218 >seq76955 Length=4939 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/89 (83%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 103768 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 103827 ||||||||||| | ||||||||| | |||| | ||||||||||||| |||||||||| Sbjct 825 TGGTGGCCCCTCCCAGACTTGAACTGGGGACCTAACGATTATGAGTCGTGTGCTCTAACC 766 Query 103828 -ACTGAGCTAAGGGGCCGTAATTCTATTA 103855 |||||||||||||||| ||| ||||| Sbjct 765 AACTGAGCTAAGGGGCC---ATTGTATTA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504649283123040