Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_027348.2 Length=73882 Score E Sequences producing significant alignments: (Bits) Value seq6372 158 6e-34 seq26 111 7e-20 >seq6372 Length=86001 Score = 158 bits (174), Expect = 6e-34 Identities = 147/185 (79%), Gaps = 9/185 (5%) Strand=Plus/Minus Query 21682 CTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCAG 21741 |||| | ||||| |||||| || ||||| ||||| ||||||||||||||||||||||| Sbjct 39382 CTGCCAGCTCTACCAGCGCTCGGCGGACATCTTCCTCGGCGTGCCCTTCAACATCGCCAG 39323 Query 21742 CTACGCGCTGCTGACGCACCTCATGGCGGCCACGGT---CGGCATGCAGGCCGAGAAGTT 21798 |||||| ||||||||| || |||| ||| ||| |||| ||||| | | |||| Sbjct 39322 CTACGCCCTGCTGACG---CTGATGGTGGCGCAGGTCTGCGGCCTGCAGCCGGGCGAGTT 39266 Query 21799 CATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGCCAA---GCA 21855 ||||||| | ||||||||||||||||||||| | |||||||| || ||| || | ||| Sbjct 39265 CATCTGGACCGGCGGTGACTGCCACCTGTACGCCAACCACATCGAGCAGACCGACCTGCA 39206 Query 21856 GCTGA 21860 ||||| Sbjct 39205 GCTGA 39201 Score = 114 bits (126), Expect = 6e-21 Identities = 270/403 (67%), Gaps = 6/403 (1%) Strand=Plus/Minus Query 21140 GACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCCAGATGGAATTCGATCTGCGT 21199 ||||| || ||||| |||||| | ||| ||||| ||||||| ||||| ||| Sbjct 39804 GACCGTACCGGCACGGGCACCTACAGCGTGTTCGGCTACCAGATGCGTTTCGACCTGGCC 39745 Query 21200 GAGGGCTTCCCCCTGCTC--CAG-AAGAAGACCACCCCCTTCACCACGATCTTCACCGAG 21256 || || |||||| | || || |||||| | | ||| | | ||||| || |||| Sbjct 39744 GATGGTTTCCCCATCGTCACCACCAAGAAGTGC--CACCTGCGCT-CGATCATCCACGAG 39688 Query 21257 CTCTCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCTACAGCAAAAGGGCTGCCAC 21316 || |||| | | |||||| ||||| | || | || || | || ||| | | Sbjct 39687 CTGCTGTGGTTCCTCCAGGGCGACACCAACATCAAGTACCTCAAGGACAACGGCGTCAGC 39628 Query 21317 ATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATGGTGCCCAGTGG 21376 ||||||||||| ||||| | | ||| |||||||||| |||| || ||||||| Sbjct 39627 ATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTCTACGGCTACCAGTGG 39568 Query 21377 CGCAGCATCCAAGGCCCCGATGGAAAGAACATCGACCAGCTGGCCAAGGCACAAGAGCTG 21436 |||||| | | ||| | || || |||||||||| | |||| ||| || Sbjct 39567 CGCAGCTGGCCGGCGCCCAACGGCGAGTCCATCGACCAGATCAGCAAGCTGGTCGAGATG 39508 Query 21437 CTGCTGAACGACCCGGACAGCCGCCGCATCATCGTGAATGCCTGGAACGTGGCCGAGCTC 21496 | | | | |||||||| ||||| | ||||| ||||||||| ||| | || Sbjct 39507 ATCCGCAGCAACCCGGACTCGCGCCGTCTGATCGTCTCGGCCTGGAACCCGGCGCTGGTC 39448 Query 21497 GACCAGATGGCCCTGACACCGTGCCATGCGATGTTCCAGTTCT 21539 || |||||||| ||| | || || |||||| |||||||||||| Sbjct 39447 GAGCAGATGGCGCTGCCGCCCTGTCATGCGCTGTTCCAGTTCT 39405 >seq26 Length=549101 Score = 111 bits (122), Expect = 7e-20 Identities = 272/407 (67%), Gaps = 14/407 (3%) Strand=Plus/Plus Query 21140 GACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCCAGATGGAATTCGATCTGCGT 21199 |||||||| ||||| |||||| | || || ||||| ||||||| ||||| ||| Sbjct 240152 GACCGCACCGGCACCGGCACCTACTCGGTGTTCGGCCACCAGATGCGCTTCGACCTGGCC 240211 Query 21200 GAGGGCTTCCCCCTGCT--CCAG-AAGAAGACCACCCCCTTCACCACGATCTTCACCGAG 21256 || |||||||| |||| ||| |||||| | | ||| | ||||| || ||| Sbjct 240212 GAAGGCTTCCCGGTGCTGACCACCAAGAAG--CTGCACCTGAAGT-CGATCATCCACGAA 240268 Query 21257 CTCTCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCTACAGCAAAAGGGCTGCCAC 21316 || |||| | |||||||| ||||| | || || || || | ||| | | Sbjct 240269 CTGCTGTGGTTCCTGCAGGGCGACACCAACATCCGCTACCTGAAGGAACACGGCGTGCGC 240328 Query 21317 ATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATGGTGCCCAGTGG 21376 ||||||||||| ||||| | | |||| |||||| ||| |||| || ||||||| Sbjct 240329 ATCTGGGACGAGTGGGCCGACGAGAACGGCGACCTCGGACCGGTCTACGGCTACCAGTGG 240388 Query 21377 CGCAGCATCCAAGGC----CCCGATGGAAAGAACATCGACCAGCTGGCCAAGGCACAAGA 21432 ||| ||| | | || || ||| ||||||||||| | ||||| | || Sbjct 240389 CGC----TCCTGGCCGACACCGGACGGACGCCACATCGACCAGATCAGCAAGGTGCTGGA 240444 Query 21433 GCTGCTGCTGAACGACCCGGACAGCCGCCGCATCATCGTGAATGCCTGGAACGTGGCCGA 21492 | || | | | | |||||| ||||| ||||||| | ||||||||| ||| Sbjct 240445 GATGATCCGGCGCACGCCGGACTCGCGCCGGCTCATCGTCAGCGCCTGGAACCCGGCACT 240504 Query 21493 GCTCGACCAGATGGCCCTGACACCGTGCCATGCGATGTTCCAGTTCT 21539 | ||||| | ||||| ||| | || ||||| || |||||||||||| Sbjct 240505 GGTCGACGACATGGCGCTGCCGCCCTGCCACGCCCTGTTCCAGTTCT 240551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235778542489028