Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq100896 165 2e-35 seq11470 131 4e-25 seq17584 111 3e-19 seq1973 111 3e-19 seq84279 107 4e-18 seq5 98.7 2e-15 seq21230 95.1 3e-14 seq128 93.3 9e-14 seq17291 89.7 1e-12 seq23 89.7 1e-12 seq100602 87.8 4e-12 >seq100896 Length=2131 Score = 165 bits (182), Expect = 2e-35 Identities = 621/953 (65%), Gaps = 42/953 (4%) Strand=Plus/Minus Query 257593 TAAGAACTTATTTCAGTTTCTTGTGGTGCAACTTGTACTGAACCACC-ACTAACCCAATG 257651 ||||| || ||||||| ||||||||| |||||||| || || ||||||| | | Sbjct 1596 TAAGAGCTGATTTCAGCTTCTTGTGGAGCAACTTGAACGTTGTCAGATACTAACCAAGAG 1537 Query 257652 CTCAGTCCAAGGTAGTGGGTTACTCTTAGATACGGTATATGGACATTTAATTCCTAGTGC 257711 | | |||| || | |||||||||||| | || | || | | | |||| || Sbjct 1536 TTGA-TCCACGGAATAGGGTTACTCTTACTTTCGAACTGTGTAGGT---AGGCCTACCGC 1481 Query 257712 AGTCATACGC---TTAGA-ACCAATCCAACGAACATATTGTTTTAGGATTTCTGCATTCA 257767 ||||||||| |||| | || ||||| ||||| || ||| ||| || | Sbjct 1480 AGTCATACGTGCATTAGTTATGTATTCAACG----TATTGGCATAAGATATCTTTGTTAA 1425 Query 257768 GCCCAATGATTGAACCATCTTTAAAGAGGAAGTCTGCCCAAGCTTCTTCTTGA-CGGATA 257826 | ||||| || |||||||| || || ||| | ||||||||| ||| |||||| | | | Sbjct 1424 GACCAATCATAGAACCATCCTTGAACAGGTATTCTGCCCAATCTTTTTCTTGTTCTGCT- 1366 Query 257827 GCAGACATAAACATTTCCAGTACTTCATCATAACACTCTTCTGCTATTTTTACCATATCT 257886 || | |||||| | | | |||| ||| ||||| | |||| | || |||| ||| Sbjct 1365 GCTTCAACAAACATCTGAATTGCTTCTTCACGACACTGTGCTGCAACGATTGCCATTTCT 1306 Query 257887 GGATCTTCTTT------TTTCAGAAGACGTAGAATCATTTGGGTTGCTGCTAGGTGTAGG 257940 || || ||||| || || || | || || || | | || ||||| Sbjct 1305 GGGTCGTCTTTACCTTCTTGCATAATGTTCAAGATGTGCTGTGTGCCAGATAAGTGTAAC 1246 Query 257941 TTTTCATCACGACAGATTAGACGGATAATCTTAGCATTACCTTCCATTAGATTGTTTTCA 258000 ||||||||| |||||| ||| || || |||||||||||||| | | ||| Sbjct 1245 GCTTCATCACGGGCGATTAGCTTGATGATTTTTGCATTACCTTCCATCAATTCACGCTCA 1186 Query 258001 GCAAACGCCCAAGAACACGCAAAGCTTGCATAAAAACGAACACCTTCAAGAATGTTAATA 258060 || || || | ||||| ||||||||| |||| ||||||| |||| | ||||||| Sbjct 1185 GCGAAAGCAAATGAACAAGCAAAGCTTACATAGAAACGAATCGCTTCTAAGATGTTAACC 1126 Query 258061 CTATTCAGACACAACCAAAGTTTTTTCTTTAGTTCGTACAAACTAATTTCAACTGTTTCA 258120 ||| | |||||| || || || || | ||||| | || |||| |||| Sbjct 1125 GACATCATTGCTAGGTAAAGTTGCTTTTTAAGGTCAAATAAACTGACTTTAACTTCTTCA 1066 Query 258121 CCATTGATTGTATGTGTCCCAACGCCCAATGCACGGTATAAAGT--TCCTAATACATCAA 258178 || ||||| |||| | || | || || ||| | || || | || | || Sbjct 1065 CCGTTGATCACATGTTTACCTTCACCATATAGGTTGTAAACAGAAATCATGTTAATTAAA 1006 Query 258179 GTTCATCGTAGTATTTGGAAACATCAGCCGCACAATCTGTGAT-TTCTGGAATGTCCAAC 258237 ||||||||||| || | || || | |||| || |||| |||| | || | Sbjct 1005 --TCATCGTAGTACTTAGTTACCGCATCAGCACGCTCACTGATCTTCTCGT-TGCTTACG 949 Query 258238 ATAGTATCAAATAC---TTCAGATGGATTAGGATAAATGTTACGAATAATGTGAGTGTAT 258294 ||| ||||| | ||||| | ||| | || ||||||||||||||| |||||| Sbjct 948 ATATCGTCAAAGATAAGTTCAGGAG-ATTGCGT--AACGTTACGAATAATGTGCGTGTAT 892 Query 258295 GATTTGCTATGAATCGCACCTTCAAAGAATGCCCATGTCTCTAT-AAAGTTCTCTAGTTC 258353 || ||||||||| | |||| ||| |||||||| || || ||||| |||| || Sbjct 891 GAACGGCTATGAATGG---TTTCACTGAACGCCCATGTTTCAATCCAAGTT-TCTAACTC 836 Query 258354 AGGTAGAGATGCATATGGAAGTAACATTAGGTTTGGACCACGACCTTGTACGGAATCAAG 258413 ||| | ||| || || | |||| | ||| || ||| |||||||| |||||| Sbjct 835 AGGAATAGACACAATAGGTAATAACGCAACGTTAGGTGAACGGCCTTGTACACTATCAAG 776 Query 258414 AAGAATTTGACGTTTCAAGTTAGAGGTAAAAATGTGCTTCTCGGAATC--ATTAAGGTTG 258471 ||| ||||| ||| |||||| ||| |||||||| ||| || | | | ||| Sbjct 775 AAGCGTTTGATATTTTAAGTTACTTAAAAATATGTGCTTTTCGTGTTCTGGTAACGCTTG 716 Query 258472 GCAAAATCAATTTTATCTTTAGATACGTCAACTTCACCAGGAGTCCAGAAGAA 258524 | || |||| |||||| ||| |||||||| ||||| ||| ||||| Sbjct 715 G--AAGTCAAGACGGTCTTTACTTACATCAACTTCTTCAGGACGCCAAAAGAA 665 >seq11470 Length=53368 Score = 131 bits (144), Expect = 4e-25 Identities = 171/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 6109 AGTTGTTCTTTTACTTGTTCAACGTGGTTTTTATAAATGTGGCAATCACCACCATTCCAA 6168 |||||| ||| |||| |||| ||||||| ||| | ||| |||||||||| ||||| Sbjct 34234 AGTTGTAATTTGGCTTGCTCAAAGTGGTTTGCATATAAGTGTGTATCACCACCAGTCCAA 34293 Query 6169 ATAAATTCACCAACATCTAAACCCGTAATTTGTGCAATCATATGAGTTAGTAGTGAATAA 6228 | ||| || |||||||||||||| | ||||||||||||||| || ||||| | ||| Sbjct 34294 ACAAAGTCCCCAACATCTAAACCACAGACTTGTGCAATCATATGGGTGAGTAGGGCATAG 34353 Query 6229 CTACTGATATTAAATGGAACTCCCAAAAATAGATCAGCGGATCTTTGATGTAGAATGCAG 6288 ||| ||||||||||| || || ||||||| ||| || | ||||| || ||| Sbjct 34354 CTAGCAATATTAAATGGCACACCTAAAAATACATCTGCACTACGTTGATAAAGTTGGCAA 34413 Query 6289 CTTAGTTTCCCTTGTACT--ACACAAAATTGTACAAAGCTATGACAAGGTGGCAA 6341 ||||| || | | ||| ||||||| | | | ||||||||||||| || Sbjct 34414 GAGAGTTT--GTTATCATGCACAAAAAATTGGAACAGGGTATGACAAGGTGGTAA 34466 >seq17584 Length=33200 Score = 111 bits (122), Expect = 3e-19 Identities = 347/526 (66%), Gaps = 20/526 (4%) Strand=Plus/Plus Query 331986 GTTTCATCAATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTA 332045 || || |||| |||||||| | || || ||| |||||||| | |||| | Sbjct 9430 GTATCTTCAACACTCGGCTCATCAACCAAAACTTTTTGGAAACGACGTTCAAGTGCAGCA 9489 Query 332046 TCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACA-CGAATCTC 332104 |||||||| |||| || ||| |||||||| | || ||||| |||| ||| || | || Sbjct 9490 TCTTTCTCAATATATTGACGGTATTCATCTAAGGTCGTTGCGCCAAC-ACAGCGTAATTC 9548 Query 332105 ACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCATTAC-TTGCGG 332163 |||||| | | ||||| || | |||||| | |||||| | ||||| || || | Sbjct 9549 ACCACGCGCCAAGGCTGGTTTCAACATATTACCTGCGTCCATCGCACCATCACCTTTC-- 9606 Query 332164 AACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATT---TTCACGTT 332220 || || ||||| | |||| | ||||| ||||| | ||| | | |||| ||| Sbjct 9607 --CCTGCACCAACGAGTGTATGTAACTCATCGATGAACAGAATGATTTCCCCTTCATGTT 9664 Query 332221 TCTTTAGTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTAC 332280 | || ||||| || | | | | ||| || ||||| ||||||||||| || | || Sbjct 9665 TTGCAAGATCTTTGAGAACAGCCTTTAGGCGCTCCTCAAACTCACCACGATATTTTGCAC 9724 Query 332281 CAGCAGTCAATGCACCAACATTTAGTGAAAGAATTTCA-ACGTCT--TTCAGGTGTTCAG 332337 | ||| |||| ||| | || | ||||| | || | | | |||| ||||| Sbjct 9725 CTGCAAGTAATGAACCCAAATCCAAAGAAAGCA---CACGCTTATTCTTCAAACTTTCAG 9781 Query 332338 GTACGTTACCATCAGCAATAGCTTGTGCAAGCCCGTCGATGATTTGTGTTTTACCTACAC 332397 | || | ||||| | ||| |||||| | || || | ||| |||||||| |||| Sbjct 9782 GGACTTCACCATTAATGATACGTTGTGCTAAACCTTCAACGATCGCAGTTTTACCCACAC 9841 Query 332398 CAGCTTCACCAGTGAGAATAGCATTCTTTTTGGTTTTGCGAGCAAGAGTCTCAATCAATG 332457 ||| ||||||| | | | || || |||||||| |||| | | || |||| || Sbjct 9842 CAGGTTCACCAATTAAGACAGGGTTATTTTTGGTGCGACGAGATAAAACCTGAATC-GTG 9900 Query 332458 CAGAC--AATTCTTTCTGGCGACCAATCATAGGATCTAGTTTGCCT 332501 | ||| | ||| | | |||||||||| || || ||||| ||| Sbjct 9901 C-GACGAATTTCATCATCACGACCAATCACTGGGTCGAGTTTCCCT 9945 >seq1973 Length=162522 Score = 111 bits (122), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 210919 TTTGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAG 210978 |||||||| ||||||||| |||||||||||||||| | |||||| ||||||||||| Sbjct 4826 TTTGGCGGAAGCGGTGAGATTCGAACTCACGGAGGACTCACACCCTCGTCGGTTTTCAAG 4885 Query 210979 ACCGTTGCATTAAACCGCTCTGCCAC 211004 |||| ||||||||||||||||||||| Sbjct 4886 ACCGGTGCATTAAACCGCTCTGCCAC 4911 >seq84279 Length=3726 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 210931 GGTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAGACCGTTGCATTA 210990 ||||||||| |||||||||||||||| | |||||| ||||||||||||||| ||||||| Sbjct 3723 GGTGAGATTCGAACTCACGGAGGACTCACACCCTCGTCGGTTTTCAAGACCGGTGCATTA 3664 Query 210991 AACCGCTCTGCCAC 211004 |||||||||||||| Sbjct 3663 AACCGCTCTGCCAC 3650 >seq5 Length=869209 Score = 98.7 bits (108), Expect = 2e-15 Identities = 209/310 (67%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 259867 TTTTTACGGATGCTTTGGTCAGCTTCGTATTTTTTATATAACTTTTCAAATTCTTTTTGA 259926 ||||||||||| | ||||||||| || || |||||| |||||| | || ||| Sbjct 711315 TTTTTACGGATCTTGCTGTCAGCTTCATACTTCACATATAAGGCTTCAAACTTTTCCTGA 711256 Query 259927 TCAGAGCAGAATGCTTCATATAGCCCAGGGACTTCATTAGGACTAAAGAATGTAATATTC 259986 || |||| || ||||| ||||| || || ||| || || || || || |||| Sbjct 711255 TCTTCAAAGAAGGCATCATACAGCCCCGGCACATCAGAGGGGCTGAACAAGGTGATATAG 711196 Query 259987 TTTCCATCAACCAAACGTTGATACAAAGTTTTGTTTACTTGGAAACAATAGTCCAGTTGA 260046 | | | || || || ||||||| ||| | || | | ||||||||| || Sbjct 711195 TCATCTTTAATCAGGCGCTGATACATCAGGCGGTTAAACTGCACGCCATAGTCCAGATGC 711136 Query 260047 CGCACACGGTTAAACTCAGTACCTTTGTTATTTTTAAGGACTACCAAGTTATCAAATTCC 260106 | || ||||| || ||| ||||||||| || || | || || | |||| Sbjct 711135 CTTACCCGGTTCTCTTCTACACCGCGGTTATTTTTCAGTACCAGCAGCGATTCCACTTCC 711076 Query 260107 AAATGCCACAATGGGAAGTGAACAG--TTGCTGCACCACCACGAACACCACCTTGTGAAC 260164 | ||||||||| ||| || ||||| | || ||||||||||| ||||| ||||| || | Sbjct 711075 AGATGCCACAAGGGGTAG--AACAGGGTGGCGGCACCACCACGCACACCGCCTTGCGAGC 711018 Query 260165 AGCTTTTAAC 260174 ||||||| || Sbjct 711017 AGCTTTTTAC 711008 >seq21230 Length=25512 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 6109 AGTTGTTCTTTTACTTGTTCAACGTGGTTTT--TATAAATGTGGCAATCACCACCATTCC 6166 |||||| || | | ||||||| ||||| |||||||||| ||| || || ||| Sbjct 8502 AGTTGTAATTGTGCCTGTTCAAAATGGTTGGCATATAAATGTGT--ATCGCCGCCTGTCC 8559 Query 6167 AAATAAATTCACCAACATCTAAACCCGTAATTTGTGCAATCATATGAGTTAGTAGTGAAT 6226 | | ||| ||||||||| | ||||| | ||| ||||||||||| || ||||| | || Sbjct 8560 AGACAAAGTCACCAACACCCAAACCACATACTTGCGCAATCATATGCGTAAGTAGGGCAT 8619 Query 6227 AACTACTGATATTAAATGGAACTCCCAAAAATAGATCAGC 6266 |||| |||||||||||||| || | |||| |||||| Sbjct 8620 AACTCGCAATATTAAATGGAACACCTAGGAATACATCAGC 8659 >seq128 Length=380166 Score = 93.3 bits (102), Expect = 9e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 210941 GAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAGACCGTTGCATTAAACCGCTCTG 211000 |||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||||| Sbjct 2 GAACTCACGGAGGACTCACACCCTCGTCGGTTTTCAAGACCGGTGCATTAAACCGCTCTG 61 Query 211001 CCAC 211004 |||| Sbjct 62 CCAC 65 >seq17291 Length=33881 Score = 89.7 bits (98), Expect = 1e-12 Identities = 236/356 (66%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 331932 TCAACATTATGGAATTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTTCA 331991 || |||| ||| || | |||| || | |||||||||| | |||| | |||||| Sbjct 26725 TCCACATGATGAAAATCTTCAAACTTATTTTTCAAACCACGTAGAATTTCGATTGTTTCA 26784 Query 331992 TCAATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTC 332051 ||| | |||||| ||| || ||||| |||||||||| ||| ||| ||||||| Sbjct 26785 CCAACACTTGGCTCATTTACATCGATTTTTTGGAAACGACGAGATAAGGCATGATCTTTC 26844 Query 332052 TCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACGAATCTCACCACGT 332111 || | | ||||||||| | | || |||| |||||| ||| | |||| | Sbjct 26845 TCAAATACCTGACGATATTCTTGGAAAGTAGTTGAACCAATACAACGTAAAGTACCATTT 26904 Query 332112 GAAAGTGCTGGCTTAAGCATATTGCTCATG--TCCATAGAACCATTACTTGCG-GAACCA 332168 | | ||||| |||| | ||| ||| ||||||| || | | ||| |||||| Sbjct 26905 GCTAAGGCTGGTTTAATTAGATTCG--ATGCATCCATAGTACTACC-CATGCTCGAACCA 26961 Query 332169 GCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGT 332228 || || | || |||||||||||||| || || | ||||| ||| | || || | Sbjct 26962 GCACCGATAATCATATGAATTTCATCTATAAATAAAATAGCATTCGGATTCTTTTTCAAA 27021 Query 332229 TCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGC 332284 | |||| || | | | || | ||||| ||||||||||| || || ||||| Sbjct 27022 GCATTTAATAACTGTTTTAAACGCTTCTCAAAGTCACCACGATATTTTGTTCCAGC 27077 >seq23 Length=559261 Score = 89.7 bits (98), Expect = 1e-12 Identities = 246/371 (66%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 331932 TCAACATTATGGAATTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTTCA 331991 ||||| | |||||| | ||| || | ||| || ||| || ||| | |||||| Sbjct 383038 TCAACGTGATGGAAATCCTCAAACTTACTTTTTAAGCCACGAAGTATTTCGATTGTTTCA 382979 Query 331992 TCAATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTC 332051 | | |||||||| || |||||||| || ||||| | ||||||| |||||| Sbjct 382978 CCCACACTCGGCTCATTCACATCAATTTTTTGGAATCGACGTGATAATGCATGATCTTTT 382919 Query 332052 TCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACG-AATCTCACCACG 332110 || | || ||| ||||| | | || |||| |||||| ||| || || |||| Sbjct 382918 TCAAATACTTGACGGTATTCTTGGAAAGTAGTTGAACCAATACAACGTAAACT-ACCATT 382860 Query 332111 TGAAAGTGCTGGCTTAAGCATATTGCTCATG--TCCATAGA---ACCATTACTTGCGGAA 332165 || | ||||| || | | || ||| ||||||| ||| |||||| | Sbjct 382859 TGCCAAAGCTGGTTTTATTAAGTTAG--ATGCATCCATAGTGCTACCCATACTTGAG--- 382805 Query 332166 CCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTT 332225 || || |||| || |||||||||||||||||||| | ||| | || | || || Sbjct 382804 CCTGCACCAATAATCATATGAATTTCATCAATGAATAAAATCGCGTTCGGATTCTTTTTC 382745 Query 332226 AGTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCA 332285 | | |||| ||| | | | |||| |||||| |||||||||||||| ||||| ||| Sbjct 382744 AAAGCATTTAACAATTGTTTTAAACGTTTTTCAAAGTCACCACGATACTTTGTACCTGCA 382685 Query 332286 GTCAATGCACC 332296 ||| ||||| Sbjct 382684 ACCAAAGCACC 382674 >seq100602 Length=2153 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 210919 TTTGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAG 210978 |||||||| ||||||||| |||||||||||||||| | |||||| ||||||||||| Sbjct 73 TTTGGCGGAAGCGGTGAGATTCGAACTCACGGAGGACTCACACCCTCGTCGGTTTTCAAG 14 Query 210979 ACCGTTGCATTAA 210991 |||| |||||||| Sbjct 13 ACCGGTGCATTAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1111258260695328