Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq80752 107 4e-18 seq23 104 5e-17 seq42394 96.9 8e-15 seq5 95.1 3e-14 >seq80752 Length=4292 Score = 107 bits (118), Expect = 4e-18 Identities = 198/283 (70%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 48444 GTATTATCTCTTAACGTTTCTGCTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAA 48503 |||||||| ||| | | |||| | ||| ||| | ||||||||||||||||| ||| Sbjct 3309 GTATTATCGCTTGATTTAGGTGCTTTGGTTGCGGGTGCTAAATACCGTGGTGAATTTGAA 3368 Query 48504 GAACGTATGGAAGGTATTATTAAA-GAACTTAAAAAACGAGAAA---ATGTAATTTTGTT 48559 || ||| | || | |||| || |||||| ||| |||| | || || | || Sbjct 3369 GAGCGTTTAAAATC-AGTATTGAATGAACTTGCCAAAGAAGAAGGCCAAGTCATCCTCTT 3427 Query 48560 CATTGATGAAGTACATATTATGATGGGTGCTGGTGGTAGCAGCACTGGATCTATGGATAT 48619 ||||||||| | |||| |||| | || || ||| | ||| || ||| | |||||| Sbjct 3428 TATTGATGAAATTCATACTATGGTAGGCGCAGGTAAAA-CAG-AC-GGAGCAATGGATGC 3484 Query 48620 GAGCAATATCATGAAACCTGCACTTTCACGTGGTGATATTCGTGTTATCGGTGCAACAAC 48679 | | ||||| | || ||||||||| | |||||||| | | | | ||||| ||||| Sbjct 3485 GGGTAATATGTTAAAGCCTGCACTTGCCCGTGGTGAGTTACATTGCGTGGGTGCCACAAC 3544 Query 48680 TTATGAGGAATATCGCCAGAACATTGAAAAAGATGCTGCATTT 48722 ||| || ||||| || |||||||||||||||| ||| || Sbjct 3545 CCTTGATGAGTATCGTCAATACATTGAAAAAGATGCGGCACTT 3587 >seq23 Length=559261 Score = 104 bits (114), Expect = 5e-17 Identities = 238/351 (68%), Gaps = 12/351 (3%) Strand=Plus/Plus Query 48473 TGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACT 48532 ||| ||| ||||||| || ||||| || || || || | ||| || | ||||| || Sbjct 125380 TGCGGGTGCAAAATATCGAGGTGAGTTTGAGGAGCGCTTAAAAGCCGTTCTAAAAGACCT 125439 Query 48533 TAAAAA--ACGAGA---AAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGT 48587 | || ||||| |||| ||| | ||||| ||||| | |||| | | ||| Sbjct 125440 TGCGAAGCACGAGGGTGAAATC--ATTCTCTTCATCGATGAGTTGCATACACTTGTTGGT 125497 Query 48588 GCTGGTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCA 48647 || ||| || || ||| | |||||| | ||||| | |||||||| | | Sbjct 125498 GCAGGTA--AGG-GCGATGGTGCGATGGATGCAGGTAATATGTTAAAACCTGCTTTGGCT 125554 Query 48648 CGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAA 48707 |||||||| | ||| | | |||||||| |||| || |||||||| || |||||||| Sbjct 125555 CGTGGTGAGTTGCGTTGTGTTGGTGCAACGACTTTAGATGAATATCGTCAATACATTGAA 125614 Query 48708 AAAGATGCTGCATTTTCCCGCCGCTTCACTAAAATTGAT-GTAGTTGAACCTAGTATTAA 48766 |||||||||||| || ||||||||| | |||| | | |||| |||||| ||| | | Sbjct 125615 AAAGATGCTGCACTTGAGCGCCGCTTC-CAAAAAGTCTTGGTAGATGAACCGAGTGTGGA 125673 Query 48767 CGAAACACGTGAAATTATTAATGGTCTGAAAGGTACTTATGAAAAATATCA 48817 || || || |||| | |||||| |||| | |||| || | |||| Sbjct 125674 AGATACGATTGCAATTTTACGTGGTCTTAAAGAGAAATATGCAACACATCA 125724 >seq42394 Length=10002 Score = 96.9 bits (106), Expect = 8e-15 Identities = 172/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 48473 TGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACT 48532 ||| |||||||||||||| ||| | || ||||| || ||| ||| | || || ||| | Sbjct 9567 TGCAGGTACAAAATACCGCGGTCAGTTTGAAGAGCGGATGAAAGCGGTGATGAACGAATT 9508 Query 48533 TAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGG 48592 ||||| | | |||| || |||||||||||||| | || | || | |||||||| Sbjct 9507 GGAAAAATCACCAGATGTTATATTGTTCATTGATGAGATCCACACCATTGTTGGTGCTGG 9448 Query 48593 TGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTGG 48652 ||| ||| || || || ||||| || || | ||||| ||| | | ||||| Sbjct 9447 AGGT-GCATCA--GGTTCATTGGATGCATCGAACATGTTCAAACCGGCATTGGCTCGTGG 9391 Query 48653 TGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAAAAAGA 48712 || || | |||||| ||||| || | || ||||| || ||| | || || ||||| Sbjct 9390 AGAGATCCAATGTATCGGGGCAACTACCTTGGATGAATACCGTCAGTATATAGAGAAAGA 9331 Query 48713 TGCTGCATT 48721 || ||||| Sbjct 9330 TGGCGCATT 9322 >seq5 Length=869209 Score = 95.1 bits (104), Expect = 3e-14 Identities = 263/398 (66%), Gaps = 4/398 (1%) Strand=Plus/Plus Query 128569 GCAGGGCTTGGTGTTAATATGGGACGTATTCGTGCAATTGATTCTGCAATTCGTGATGGC 128628 ||||| ||||| |||| || |||||||| || | | | |||| ||| ||||| Sbjct 710897 GCAGGTATTGGTATTAACGCAGGCCGTATTCGCGCTTTAGGTAGCCCAATCCGTAATGGC 710956 Query 128629 GATGCAGTACATACTGG-TGTAGTACCATTCTTATCTGCATTAGCAAAAA-CTGTCAAAA 128686 || || | |||||||| |||| | || || |||| ||||| || | | || |||| Sbjct 710957 GAAGCCTTTCATACTGGCTGTA-TCCCGTT-TTATAAGCATTTCCAGACCGCAGTAAAAA 711014 Query 128687 GCTGTTCCCAGGGAGGTGTAAGAGGCGGGGCAGCAACCGTACATTTTCCAATGTGGCATT 128746 |||| || || || ||||| | || || || || ||| | | || |||||||| Sbjct 711015 GCTGCTCGCAAGGCGGTGTGCGTGGTGGTGCCGCCACCCTGTTCTACCCCTTGTGGCATC 711074 Query 128747 TGGAATTTGAAAATATTGTAGTACTGAAAAATAATAAAGGAACTGAATTTAACCGAGTAA 128806 ||||| | ||| | | |||||||||||||| || ||| ||||| |||| Sbjct 711075 TGGAAGTGGAATCGCTGCTGGTACTGAAAAATAACCGCGGTGTAGAAGAGAACCGGGTAA 711134 Query 128807 GACAACTGGACTATTGCTTCCAAATCAATAAGACATTATATCAACGATTGATTGATGGAA 128866 | || ||||||||| || | || | || | ||||| || ||||| | | Sbjct 711135 GGCATCTGGACTATGGCGTGCAGTTTAACCGCCTGATGTATCAGCGCCTGATTAAAGATG 711194 Query 128867 AAGACATTACATTCTTTAGCCCACATGATGTTCCTGATCTATATGATGCATTTTGTGCTG 128926 | | || || || || ||||| |||||| || | || |||||||| || | || | Sbjct 711195 ACTATATCACCTTGTTCAGCCCCTCTGATGTGCCGGGGCTGTATGATGCCTTCTTTGAAG 711254 Query 128927 ATCAAGAAGAATTTGAACGTCTGTATATTAAGTATGAA 128964 |||| ||| | |||||| | ||| | ||||||||| Sbjct 711255 ATCAGGAAAAGTTTGAAGCCTTATATGTGAAGTATGAA 711292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106434226495764