Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq6372 109 8e-19 seq11470 102 1e-16 seq21230 98.7 2e-15 seq163424 93.3 6e-14 seq26 86.0 1e-11 >seq6372 Length=86001 Score = 109 bits (120), Expect = 8e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 197707 CCAGATGCGTTTTGATTTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCT 197766 |||||||||||| || || | |||||||| | ||||| || ||||| |||||| Sbjct 39766 CCAGATGCGTTTCGACCTGGCCGATGGTTTCCCCATCGTCACCACCAAGAAGTGCCACCT 39707 Query 197767 GCGTTCTATTATCCATGAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCT 197826 ||| || || ||||| || |||||||||||||| || || ||||||| ||| || || Sbjct 39706 GCGCTCGATCATCCACGAGCTGCTGTGGTTCCTCCAGGGCGACACCAACATCAAGTACCT 39647 Query 197827 GGAAGATAACGGCGTTACCATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886 | || |||||||| | ||| ||| |||||| || || || || ||||| ||||| Sbjct 39646 CAAGGACAACGGCGTCAGCATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCC 39587 Score = 104 bits (114), Expect = 4e-17 Identities = 152/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 198329 CTTTCATGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATC 198388 || || || |||||||| || ||| ||||| | |||||||||||||| ||||||||| Sbjct 39387 CTGTCCTGCCAGCTCTACCAGCGCTCGGCGGACATCTTCCTCGGCGTGCCCTTCAACATC 39328 Query 198389 GCGTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGT---TAACATGGTGCCGGGC 198445 || ||||| | || || ||||| || |||||| | || ||||||| Sbjct 39327 GCCAGCTACGCCCTGCTGACGCTGATGGTGGC---GCAGGTCTGCGGCCTGCAGCCGGGC 39271 Query 198446 GATTTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAG 198505 || ||||| ||||| ||||||||| || || ||| | || || | |||||| || | Sbjct 39270 GAGTTCATCTGGACCGGCGGTGACTGCCACCTGTACGCCAACCACATCGAGCAGACCGAC 39211 Query 198506 CTCCAGCTGACGCGTGAGCCGTTACCTTTACCGA 198539 || |||||||| ||| ||||| | || | |||| Sbjct 39210 CTGCAGCTGACCCGTCAGCCGCTGCCGCTGCCGA 39177 >seq11470 Length=53368 Score = 102 bits (112), Expect = 1e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 197663 AAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGAT 197722 || || || ||||| || ||||| || | ||| || ||||| | || |||||||||||| Sbjct 34889 AAGGGTGACCGTACAGGTACAGGTACACGTTCGGTATTTGGTCATCAAATGCGTTTTGAT 34830 Query 197723 TTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCAT 197782 | ||||||||| || ||| | || ||||||||| | ||| | ||||| ||| | | Sbjct 34829 CTTTCTAAAGGTTTTCCATTACTAACCACTAAGAAAGTTCACTTTCGTTCAATTGTAATT 34770 Query 197783 GAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTT 197842 || || || |||||||| | || ||||| ||| ||||||| |||| || || Sbjct 34769 GAGCTTCTTTGGTTCCTCAAAGGTGATACTAACGTTCAATATCTCAAAGACAATAAAGTC 34710 Query 197843 ACCATTTGG 197851 || |||||| Sbjct 34709 ACTATTTGG 34701 >seq21230 Length=25512 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 197663 AAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGAT 197722 || ||||| |||||||| ||||| || | ||| || ||||| | || |||||||||||| Sbjct 9157 AAGGGCGACCGTACTGGTACAGGAACACGTTCAGTATTTGGTCATCAAATGCGTTTTGAT 9098 Query 197723 TTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCAT 197782 || ||| |||||||| || |||| || || ||| | || | || || || || | Sbjct 9097 TTATCTAACGGTTTCCCACTACTCACCACAAAAAAAGTACATTTCCGCTCAATCGTCATT 9038 Query 197783 GAACTGCTGTGGTTCCTTAGTGGGGATACCAA 197814 ||||| || ||||| |||| || |||||||| Sbjct 9037 GAACTACTTTGGTTTCTTAAAGGTGATACCAA 9006 >seq163424 Length=1083 Score = 93.3 bits (102), Expect = 6e-14 Identities = 195/286 (68%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAG-GCGAT 197671 ||||||||||||| || |||||| || | | || | || || || ||| | ||| Sbjct 700 TGAAACAATATCTCGACCTGATGCGCCACGTGCGCGAGAACGG-CACCTTTAAGAGTGAT 758 Query 197672 CGTACTGGAACAGGGACGCTTTC--TGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTA 197729 || || || || || || || | ||| ||||| | |||||||| |||||| || Sbjct 759 CGCACCGGCACCGGCAC--TTACAGTGTGTTTGGCCATCAGATGCGCTTTGATCTGGCCG 816 Query 197730 AAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGC 197789 | || || ||| | || || || ||||| || || || || ||||| || |||| Sbjct 817 AGGGCTTTCCGCTGGTGACCACCAAGAAGTGTCATCTCAAGTCCATCATCCACGAGCTGC 876 Query 197790 TGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTT 197849 ||||||| | || |||||||||| | |||||| | || |||||||| |||| | Sbjct 877 TGTGGTTTTTGCAGGGCGATACCAACATCCGGTATCTGAAGGAAAACGGCGTCTCCATCT 936 Query 197850 GGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGG 197895 || |||||| ||| || ||||| |||| || || | ||||| Sbjct 937 GGGACGAGTGGGCAGACGAGAATGGCGACCTGGGGCCGGTCTATGG 982 >seq26 Length=549101 Score = 86.0 bits (94), Expect = 1e-11 Identities = 164/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 197649 ACGAGGGTCATGTTAAAG-GCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGC 197707 |||| || || ||| ||| |||| || || || || || || || || || || | | Sbjct 240132 ACGAAGGCCA-GTTCAAGAGCGACCGCACCGGCACCGGCACCTACTCGGTGTTCGGCCAC 240190 Query 197708 CAGATGCGTTTTGATTTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTG 197767 |||||||| || || || |||| |||||| | | || || ||||| || |||||| Sbjct 240191 CAGATGCGCTTCGACCTGGCCGAAGGCTTCCCGGTGCTGACCACCAAGAAGCTGCACCTG 240250 Query 197768 CGTTCTATTATCCATGAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTG 197827 || || ||||| ||||||||||||||||| || || ||||||| | || ||| Sbjct 240251 AAGTCGATCATCCACGAACTGCTGTGGTTCCTGCAGGGCGACACCAACATCCGCTACCTG 240310 Query 197828 GAAGATAACGGCGTTACCATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886 | || ||||||| ||| ||| |||||| || || || || |||| || || Sbjct 240311 AAGGAACACGGCGTGCGCATCTGGGACGAGTGGGCCGACGAGAACGGCGACCTCGGACC 240369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 767460645278880