Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq18050 352 2e-92 seq38288 266 3e-66 seq76486 167 2e-36 seq5663 161 8e-35 seq84794 147 2e-30 seq77092 143 2e-29 seq27548 123 2e-23 seq14733 89.7 4e-13 seq10496 89.7 4e-13 >seq18050 Length=32055 Score = 352 bits (390), Expect = 2e-92 Identities = 591/845 (70%), Gaps = 30/845 (4%) Strand=Plus/Minus Query 43740 TGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACT 43799 |||||||||| || || || ||||||| ||||||| | ||||| | ||||| Sbjct 12404 TGTACAAAAAGGCCGTTGCTTCCTTTTGGATGGCAGAAG---TGAATTTGTCCAAAGATG 12348 Query 43800 TAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGT 43859 || | |||||| ||||| || | ||| | |||| | ||| |||||||| | Sbjct 12347 TAAGATATTGGAAAAGATTAACCCCCGATGAACGGCGTTTTCTTTCTCATGTTTTGGCCT 12288 Query 43860 TTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAG 43919 |||| || || || || || || || ||||||||||| || || ||||| | |||| Sbjct 12287 TTTT-GCCGCCAGTGAAGGTATTGTAAATGAAAATTTAGTGGAACGCTTTGCTCGTGAAG 12229 Query 43920 TTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATT 43979 | || | || || || || ||||||| ||||| |||||||| ||||||||||||| Sbjct 12228 TAAAAGTGATCGAGGCTCGTTGCTTTTATGACTTTCAGATTGCCATTGAAAATATTCATT 12169 Query 43980 CGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT 44039 | ||||||||||| | |||| || || | | |||| || || || || || Sbjct 12168 CAGAAATGTACAGCTTGTTGATTGAGACCCTCGTTCGAGATCATCAAGAAAAAAATACAT 12109 Query 44040 TGTTTAATGCGATAGAAACAGTA-CCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 ||||||| || || ||||| | |||||| |||| | || ||||| ||| | | || Sbjct 12108 TGTTTAACGCCATTGAAACCCTTTCCTGCG-TTAAGAAAAAGGCAGAATGGTCATTAAAT 12050 Query 44099 TGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGC 44158 |||||| | ||| |||||| | |||| || || || ||||| | ||||||||| Sbjct 12049 TGGATACA---AAACCCGTCTTTTCCAAAACGGCTGGTGGCCTTTGCCGCTGTGGAAGGA 11993 Query 44159 ATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCT 44218 || | || ||||| || ||||||||||| ||||||||||||||||| || || |||||| Sbjct 11992 ATCCTTTTCTCAGGTTCCTTTGCGGCCATTTTTTGGTTAAAGAAACGGGGATTAATGCCT 11933 Query 44219 GGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCT 44278 | || |||||| || ||||| || ||||| |||||||| |||| ||||||||| | Sbjct 11932 TGATTAACGTTTAGCAACGAGTTGATTAGTCGAGATGAAGGGCTACACTGCGATTTTTCC 11873 Query 44279 TG---CTTGTTACTTGGATATCTAGGAGACGA------TAAGCCTTCATGTAAGACAATT 44329 || |||||| | || || | || | ||||| || | | | |||| Sbjct 11872 TGTCACTTGTTCAATCATTACGTAAAAAACAAATCATCTAAGCATTAAATTGTGCAAATT 11813 Query 44330 ACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCT 44389 |||| || | || |||| ||| || ||||||||| | || |||||||| Sbjct 11812 ----ATATCGT-----ATGCCGTAACGATTGAGCAAGAATTTTTAACCGAGGCATTACCA 11762 Query 44390 GTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGA 44448 ||| | || || ||||| || || ||||| || ||||||||||||| | ||||| Sbjct 11761 GTATCCCTCATTGGCATGAATTGTAC-ATTGATAAAGCAATATATTGAATTTGTGGCAGA 11703 Query 44449 TCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGA-TT 44507 || ||| | | |||| |||| || |||||| |||||||| ||||||| ||||| || Sbjct 11702 CCGATTATTGTGGGAATTGGGGTGTGATAAAATTTATATTGTGGAAAACCCTTTTGATTT 11643 Query 44508 TTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAAT 44567 || ||||| |||| |||||||| ||||| || | |||| ||||||| || || |||| Sbjct 11642 TTTTGGAATGTATTAGTTTGGAAGGAAAAACCAATTGTTTTTAAAAACGTGTCGGGGAAT 11583 Query 44568 ATCAG 44572 | ||| Sbjct 11582 ACCAG 11578 >seq38288 Length=11396 Score = 266 bits (294), Expect = 3e-66 Identities = 392/551 (71%), Gaps = 8/551 (1%) Strand=Plus/Minus Query 43740 TGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACT 43799 |||||||||| || || || || ||||| ||||||||||| |||||| | ||||| Sbjct 8208 TGTACAAAAAGGCTGTCGCTTCCTTCTGGACGGCAGAAGAAGTGGATTTGTCCAAAGATG 8149 Query 43800 TAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGT 43859 | | ||||| ||||| || | || |||||| | || ||| |||| | Sbjct 8148 GGGGAGATTGGGAAAGATTAACCCCCGATAAATGGCATTTTCTTTCCCATGTTCTGGCCT 8089 Query 43860 TTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAG 43919 ||||||| || || || || || || | ||||||||| || || || || | |||| Sbjct 8088 TTTTTGCCGCCAGTGATGGTATTGTAATTGAAAATTTAGTGGAACGCTTCGCTCGCGAAG 8029 Query 43920 TTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATT 43979 | || | | |||| || || |||||||| ||||| |||||||| |||||||| |||| Sbjct 8028 TCAAAGTGACCGAAGTTCGTTGCTTTTATGGCTTTCAGATTGCCATTGAAAATATACATT 7969 Query 43980 CGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT 44039 | ||||||||||| | ||||| || | ||| |||| || || || || || Sbjct 7968 CAGAAATGTACAGCTTGCTGATTGAGATCCTCATTTGAGATCATCAAGAAAAAAATAAAT 7909 Query 44040 TGTTTAATGCGATAGAAACAGTA-CCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 ||||||| || || ||||| | ||||| |||| | || ||||| ||||| | || Sbjct 7908 TGTTTAACGCCATTGAAACCCTTTCCTGCT-TTAAGAAAAAGGCAGAATGGGCATTAAAT 7850 Query 44099 TGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGC 44158 |||||| | |||| ||||||| | |||| | || || ||||| | ||||||||| Sbjct 7849 TGGATACA---AAATCCATCTTTTGCAAAACGGTTGGTGGCCTTTGCCGCTGTGGAAGGA 7793 Query 44159 ATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCT 44218 || || || ||||| || ||| |||| || ||||||||||||||||| | || |||||| Sbjct 7792 ATCTTTTTCTCAGGTTCCTTTTCGGCTATTTTTTGGTTAAAGAAACGGGAATTAATGCCT 7733 Query 44219 GGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCT 44278 || || |||||| || |||| || ||||| |||||||| |||| || |||||||| Sbjct 7732 GGATTAACGTTTAGCAACAAGTTGATGAGTCGAGATGAAGGACTACACTGGGATTTTGCC 7673 Query 44279 TG---CTTGTT 44286 || |||||| Sbjct 7672 TGTCACTTGTT 7662 >seq76486 Length=4962 Score = 167 bits (184), Expect = 2e-36 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 44038 ATTGTTTAATGCGATAGAAACAGTA-CCTGCGATTAAACATAAAGCAGACTGGGCCCTTA 44096 ||||||||| || || ||||| | |||||| ||||| | || ||||| ||||| ||| Sbjct 2 ATTGTTTAACGCCATTGAAACCCTTTCCTGCG-TTAAAAA-AAGGCAGAATGGGCATTTA 59 Query 44097 AATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156 | |||||| | |||| ||||||| | ||| | | || || ||||| | |||||||| Sbjct 60 ATTGGATACA---AAATCTATCTTTTGCATAACAATTGGTAGCCTTTGCCGCTGTGGAAG 116 Query 44157 GCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGC 44216 | || || || || || || ||||||||||| ||||||||||||||||| || || |||| Sbjct 117 GAATCTTTTTCTCTGGTTCCTTTGCGGCCATTTTTTGGTTAAAGAAACGGGGATTAATGC 176 Query 44217 CTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACA 44265 |||| || |||||| || ||||| || ||||| |||||||| ||||| Sbjct 177 CTGGATTAACGTTTAGCAACGAGTTGATTAGTCGAGATGAAGGATTACA 225 >seq5663 Length=92856 Score = 161 bits (178), Expect = 8e-35 Identities = 169/221 (76%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 43680 TTAC-AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAA 43738 |||| ||||||||| ||||||||| | ||||| ||| | ||||| ||||| |||||| Sbjct 71775 TTACGAGAAAATCCTCGGAGGTTTGTCATATTTCCTATTGAGTATCAGGACATCTGGCAA 71834 Query 43739 ATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC 43798 |||||||| ||||| | || ||||||||||| || ||||||||||| || | ||||| Sbjct 71835 ATGTACAAGAAAGCTGAAGCATCATTTTGGACTGCTGAAGAAGTTGACTTATCAAAAGAT 71894 Query 43799 TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCG 43858 | | ||||| ||||||||| ||||||| |||||||| || |||| || Sbjct 71895 CTGATAGATTGGGAAAAATTAAAACCGGAAGAAAAGCATTTTATCTCCCATATTTTAGCC 71954 Query 43859 TTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGT 43899 ||||||||||| || || || || || |||||||| ||||| Sbjct 71955 TTTTTTGCTGCCAGTGATGGCATTGTGAATGAAAACTTGGT 71995 Score = 120 bits (132), Expect = 2e-22 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 43905 GGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 ||||| |||||||||||| | | |||||| | |||||||||||||| ||||| |||| Sbjct 73543 GGTTTAGCCAAGAAGTTCAAGTGACTGAAGCAAGGTGTTTTTATGGGTTCCAAATCGCCA 73602 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 | |||||| | ||||| ||||||||||| ||||| |||||||| || || |||||| Sbjct 73603 TTGAAAATGTACATTCTGAAATGTACAGCCTTCTTATAGATACTTATATTAAAGAT 73658 Score = 116 bits (128), Expect = 3e-21 Identities = 161/222 (73%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 44039 TTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 || || ||||| || ||||| |||| || | | || | || || || ||||| ||||| Sbjct 79244 TTATTCAATGCTATTGAAACTCTACCGTGTG-TCAAGAAGAAGGCTGATTGGGCTCTTAA 79302 Query 44098 ATGGATAAATTCA---AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 ||||| | ||| | || ||| ||||| || ||| | || || ||||| | || || Sbjct 79303 CTGGATCAGCTCAGCGAGTGCTTCCTTTGGTGAGCGAGTAGTTGCATTTGCTGCAGTTGA 79362 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| || ||||| || || || ||||| | || || ||||| ||||| |||||||||| Sbjct 79363 AGGAATATTCTTCTCTGGCTCTTTTGCTTCTATTTTCTGGTTGAAGAAGAGAGGTTTGAT 79422 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 |||||| ||||| || |||||| ||||||| | ||||| Sbjct 79423 GCCTGGTTTGACATTCAGCAATGAGCTAATAAGCAGAGATGA 79464 >seq84794 Length=3643 Score = 147 bits (162), Expect = 2e-30 Identities = 143/180 (79%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 44417 TTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGAT 44476 |||||||| ||||||||||||| | ||||| || ||| | | ||||||||| || ||| Sbjct 3218 TTGATGAAGCAATATATTGAATTTGTGGCAGACCGATTATTGTGGGAACTGGGATGTGAT 3277 Query 44477 AAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAA 44536 ||| |||| || ||||||| ||||||||||||||| |||| |||||||| ||| Sbjct 3278 AAAATTTATAACGTGGAAAACCCTTTTGATTTTATGGAATGTATTAGTTTGGAAGGAAAA 3337 Query 44537 ACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATG-GGCGTCATGAT-AACAA 44594 || | |||||||||||||| ||||||||||| ||| |||| || |||||| | ||||| Sbjct 3338 ACCAGTTTTTTTGAAAAACGTGTTGGAGAATAACAG-AAATGTGGAGTCATGTTCAACAA 3396 >seq77092 Length=4929 Score = 143 bits (158), Expect = 2e-29 Identities = 176/240 (73%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 44038 ATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 ||||||||| || || ||||| | | |||| | || ||||| ||||| | || Sbjct 39 ATTGTTTAACGCCATTGAAACTCTTTTTTTCGTTAAGAAAAAGGCAGAATGGGCATTAAA 98 Query 44098 ATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 |||||| | |||| ||||||| | ||||| || || ||||| | ||||||||| Sbjct 99 TTGGATACA---AAATCCATCTTTTGCAAAACGATAGGTGGCCTTTGCCGCTGTGGAAGG 155 Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 || || || ||| | | ||||||||||| ||| ||||||||||||| || || ||||| Sbjct 156 AATCTTTTTCTCATGTTGCTTTGCGGCCATTTTTCGGTTAAAGAAACGGGGATTAATGCC 215 Query 44218 TGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 ||| || |||||| || || || || ||||| |||||||| |||| || |||||||| Sbjct 216 TGGATTAACGTTTAGCAACGAATTGATTAGTCGAGATGAAGGACTACACTGTGATTTTGC 275 >seq27548 Length=17515 Score = 123 bits (136), Expect = 2e-23 Identities = 132/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 44417 TTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGAT 44476 |||||||| |||||||||||| | ||||| || ||| | | |||| |||| || ||| Sbjct 36 TTGATGAAGAAATATATTGAATTTGTGGCAGACCGATTATTGTGGGAATTGGGATGTGAT 95 Query 44477 AAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAA 44536 ||| |||| || ||||||| ||||||||||||||| |||| |||||||| ||| Sbjct 96 AAAATTTATAACGTGGAAAACCCTTTTGATTTTATGGAATGTATTAGTTTGGAAGGAAAA 155 Query 44537 ACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATG-GGCGTCATG 44587 || || |||||| | ||||| || |||||| | ||| |||| || |||||| Sbjct 156 ACCAATTTTTTTAAGAAACGTGTCGGAGAACACCAG-AAATGTGGAGTCATG 206 >seq14733 Length=41167 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 41138 GGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197 ||| ||||| || || ||||||||||| || |||||||| | || ||||||||||| | Sbjct 24313 GGGTCTAGGTGTACCATTTAACATAGCTAGCTATGCTCTTTTAACTCATATGATTGCAAA 24372 Query 41198 CGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACAT 41257 || || || | ||| |||| || |||||||| || | ||||||| || || || | Sbjct 24373 AGTCACTGATCTCAAAACTGGAGATTTTGTTCATACCGTTGGAGATGCTCACATATATCT 24432 Query 41258 TAATCACATAGA-GCCGTTAACAGAACA 41284 | | || ||||| || |||| |||||| Sbjct 24433 TGACCATATAGATGCTCTTAA-AGAACA 24459 >seq10496 Length=57948 Score = 89.7 bits (98), Expect = 4e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || |||||||||||||| || | |||||| | |||||||| || | || |||| |||| Sbjct 35855 CCAAAAATTGTAAATGGACCCCAGATCTTAGACAAATATGTTGGAGAGTCTGAAGCAAAT 35914 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGT 19530 | ||| | | |||||||| |||||||||||| |||||||| Sbjct 35915 ATTCGAAGGCTTTTTGCTGAAGCTGAAGAAGAAGAAAAACGT 35956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396582937717180