Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2234 105 6e-18 >seq2234 Length=154088 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||||| | ||||| |||| ||||| || || || ||||| || || Sbjct 12874 TGCCTCCTCTCAACCTGAGAACCAAGTGTAGAGTAGATTCCTTCTGGATATTATAATCTG 12815 Query 27079 TCAT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || ||| || | ||||| || |||||||| || | || | | ||| ||||| || Sbjct 12814 ACAAAGTTCTGC-CATCTTCAAGTTGTTTACCAGCAAAGATTAACCTCTGCTGATCTGGG 12756 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||| |||||||| ||| ||| ||||| | || | || || | | |||| Sbjct 12755 GGAATACCTTCTTTATCCTGGATTTTGGCTTTCACATTCTCAATTGTATCACTAGGTTCA 12696 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||| || || | |||||| ||||| ||||| ||||| |||||||| Sbjct 12695 ACTTCTAAGGTGATGGTTTTGCCAGTCAGGGTTTTAACAAAAATTTGCAT 12646 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| |||||||| || | | || | ||||| ||||| || || Sbjct 10934 GTGGATTCTTTTTGGATATTGTAATCTGAAAGAGTACGGCCATCTTCAAGCTGCTTTCCA 10875 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| ||||| || || | |||||||||||| |||||| ||| Sbjct 10874 GCAAAGATCAGCCTCTGCTGATCTGGTGGGATACCCTCTTTATCTTGAATCTTGGCCTTC 10815 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||| | | || ||||| ||||| || | ||| || |||||||| Sbjct 10814 ACATTTTCGATTGTGTCACTAGGCTCCACTTCAAGAGTGATGGTTTTTCCAGTCAGAGTC 10755 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 10754 TTCACAAAGATCTGCATA 10737 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || |||||||| || || | || | Sbjct 11180 CGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGACAGAGTACGACCA 11121 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| |||||||| |||||| | || | | ||| || || || || | || |||||| Sbjct 11120 TCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATGCCTTCTTTA 11061 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || |||| | |||||| ||||| | | ||||||||||| ||||| Sbjct 11060 TCCTGGATTTTTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAACTTCTAACGTTATG 11001 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || |||||||| || || || |||||||| Sbjct 11000 GTCTTCCCTGTCAGAGTCTTTACGAATATTTGCAT 10966 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| |||||||| || ||||| || || | | ||| | ||||| ||||||||||| Sbjct 12302 GTAGACTCTTTTTGGATGTTGTAATCCGACAGGGTACGCCCATCTTCAAGCTGTTTACCA 12243 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| || | || ||||| || || | || |||||||| || || |||| Sbjct 12242 GCAAAAATCAGCCTTTGCTGATCTGGTGGAATGCCTTCTTTATCTTGAATTTTTGTTTTG 12183 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | || || | | ||| ||||||| || || | || || || || ||| Sbjct 12182 ACATTTTCAATTGTATCGCTTGGTTCTACTTCTAAGGTGATGGTCTTTCCAGTGAGGGTT 12123 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| |||||||| Sbjct 12122 TTAACAAAAATTTGCAT 12106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCT 27095 || |||| ||| | ||||| ||||||||||| || || || || | || | ||| Sbjct 12089 AAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGACAGAGTACGGCCATCT 12030 Query 27096 TCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCG 27155 || || || ||||| || |||| | |||||| ||||| || || | || ||||| || Sbjct 12029 TCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTCC 11970 Query 27156 GCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGAT 27215 ||| || ||| | |||| | || || | | ||| ||||||| || || | | Sbjct 11969 TGGATTTTTGCTTTAACATTTTCAATGGTATCACTTGGTTCGACTTCTAATGTAATTGTT 11910 Query 27216 TTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| || ||||| |||||||| Sbjct 11909 TTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | | | ||| ||||| || | || || || ||||| || |||||||| Sbjct 11878 TGCCTCCTCTTAGTCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGGATGTTGTAGTCCG 11819 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | ||||| ||||| || || || | || | || |||||||| || | Sbjct 11818 ACAGAGTACGTCCATCTTCTAGCTGCTTGCCCGCAAAGATTAATCGTTGTTGATCAGGAG 11759 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || ||||| || || ||| | |||| | || || | | |||| Sbjct 11758 GGATACCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCAATTGTATCACTTGGCTCAA 11699 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||||||| || || | || || || |||||||| || |||||||||||| || || Sbjct 11698 CTTCTAGTGTAATTGTCTTCCCAGTAAGAGTTTTGACGAAGATTTGCATACCTCCT 11643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424000977942432