Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq57698 132 6e-26 seq68 93.3 5e-14 seq1973 91.5 2e-13 seq8748 82.4 1e-10 >seq57698 Length=6283 Score = 132 bits (146), Expect = 6e-26 Identities = 265/384 (69%), Gaps = 29/384 (8%) Strand=Plus/Minus Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 |||| || ||||||||||| || ||||| | || | |||||| | ||| ||||| |||| Sbjct 5072 CTTGACGGTCAAAACGACCTGGACGAAGTAATGCTTTATCAAGAACATCTACGCGGTTAG 5013 Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTA 11561 | || |||||||| | || ||| |||||| ||||| ||||||||||| || | Sbjct 5012 TCGCAGCAATAACGATAACGCC---TTCATTGCCTTCAAAACCATCCATCTCAACAAGCA 4956 Query 11562 ATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA-CTG-----C 11615 ||| || | ||||| || | |||||||| | |||||||| | ||| | Sbjct 4955 TTTGGTTTAAGGTTTGCTCACGCTCATCAT------GACCACCACCAGTACCTGAACCAC 4902 Query 11616 GTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG---TTGA-TTTTCG 11671 | || || || ||||||||||||||||| |||| ||||| || ||| ||||| Sbjct 4901 GATGACGACCAACAGCATCAATCTCATCAATAAAGATGATACAAGGCGCATGACGTTTCG 4842 Query 11672 CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACA 11731 | | |||||| | ||| ||||| | ||||| |||||||| ||||| || ||| Sbjct 4841 CTTG----TTCAAACATATCACGAACACGCGATGCACCTACACCAACGAACATTTCGACA 4786 Query 11732 AAGTTTGCGGCAGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGC 11790 |||| | ||||| ||| || ||| || || || | |||||| || || ||| || Sbjct 4785 AAGTCAGAACCAGAGATACT-GAAGAAAGGTACTTTAGCTTCACCAGCAATTGCTTTTGC 4727 Query 11791 GAGGAGGGTCTTTCCCGTACCTGG 11814 | | || || || |||||||| Sbjct 4726 TAATAATGTTTTACCTGTACCTGG 4703 >seq68 Length=444459 Score = 93.3 bits (102), Expect = 5e-14 Identities = 337/517 (65%), Gaps = 18/517 (3%) Strand=Plus/Plus Query 11437 CACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCAC 11496 ||| ||||||| ||| || || || || ||||| || || || || || | |||| Sbjct 24909 CACATGGATCTGGCGGTCGAAGCGGCCGGGGCGCAGCAGCGCCGGGTCCAGCACATCCTT 24968 Query 11497 GCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTC 11553 || || || ||||| | | | || || ||||| || || || |||||||| Sbjct 24969 ACGGTTGGTCGCCGCGA---CGATGATCACACCTTCATTTGCCTCGAACCCGTCCATCTC 25025 Query 11554 GGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTT--GCTGGC-ATACCACCAGC 11610 | || | || || | ||| ||||| | || ||||| || | | ||||| || | Sbjct 25026 GACCAGAAGCTGGTTCAGTGTCTGTTCGCGTTCGTCATTGCCGCCGCCGATACC--CA-C 25082 Query 11611 ACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTC 11670 | ||| |||||| || || ||||| || || || || || || || ||| | Sbjct 25083 GCCGCGCGCACGGCCCACGGCGTCGATCTCGTCGATAAACACGATGCAAGGCGCATTCTT 25142 Query 11671 GCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCAC 11730 ||| ||| || | ||||| || | ||||| || ||||| ||||| ||||| Sbjct 25143 CTTGGCCTGTTCGAACATGTCGCGCACACGGGATGCACCGACCCCAACGAACATTTCCAC 25202 Query 11731 AAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGC 11790 |||| | | ||| || ||| || || | |||||||||||||| || || Sbjct 25203 GAAGTCGGAACCCGAGATGGTGAAGAACGGCACGCCCGCCTCACCCGCGATGGCGCGCGC 25262 Query 11791 GAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGC 11850 ||| ||||| || ||||| || || ||| | || || || ||| |||||||||| | Sbjct 25263 GAGCAGGGTTTTACCCGTGCCGGGGGGACCGACCAGCAGCGCACCTTTGGGGATCTTGCC 25322 Query 11851 ACC---ACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTC 11907 || || | |||| ||| |||||||| || || || || |||||||| || || Sbjct 25323 GCCGAGAC-GCGAAAACTTCT-GCGGGTTGC-GCAGGAATTCGACGATCTCTTCCAGCTC 25379 Query 11908 ATCTTTGGCCGCGTCAATCCCCTCAACATCACTGAAG 11944 || |||||| |||| || || | || ||| |||| Sbjct 25380 TTCCTTGGCCTCGTCGATGCCGGCCACGTCATCGAAG 25416 >seq1973 Length=162522 Score = 91.5 bits (100), Expect = 2e-13 Identities = 255/381 (67%), Gaps = 23/381 (6%) Strand=Plus/Plus Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 |||| || ||||||||||| || ||||| | || | ||| | | ||| || || || | Sbjct 27184 CTTGACGGTCAAAACGACCTGGACGAAGTAAAGCTTTATCCAATACATCTACACGGTTTG 27243 Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTA 11561 |||| ||||| || | | || |||||| || || || |||||||| || | Sbjct 27244 TGGCAGCAATTACGATCACACCT---TCATTGCCTTCGAAACCGTCCATCTCTACAAGCA 27300 Query 11562 ATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACC---ACCAGCACTGCGTT 11618 ||| || | |||||||| | ||||||| | || ||| ||| | || || | Sbjct 27301 TTTGGTTCAAGGTTTGTTCACGTTCATCATGACC--GCC-ACCTGTACCTGAACCACGAT 27357 Query 11619 GCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT---TGA-TTTTCGCGG 11674 | || || |||||||||||||||||||| | ||||||||| ||| ||| || Sbjct 27358 GACGACCTACAGCATCAATCTCATCAATGAAAATGATACATGGTGCATGACGTTTAGCTT 27417 Query 11675 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAG 11734 | ||| || | ||| ||||| | ||||| |||||||||||||| || || || Sbjct 27418 G----TTCGAACATATCACGAACACGAGAAGCACCAACACCAACAAACATTTCAACGAAA 27473 Query 11735 TTTGCGGCAG-AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAG 11793 | | ||| | ||| | ||| || || || | |||||| || || ||| ||| | Sbjct 27474 TCAGAACCAGAAATACT-AAAGAAAGGAACTTTAGCTTCACCAGCAATTGCTTTGGCTAA 27532 Query 11794 GAGGGTCTTTCCCGTACCTGG 11814 | || || ||||||||||| Sbjct 27533 TAATGTTTTACCCGTACCTGG 27553 >seq8748 Length=68017 Score = 82.4 bits (90), Expect = 1e-10 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 || || || | |||||||||||| || ||| || || ||| || |||||||||||||| Sbjct 32988 GTATATTCAACAATTTCTGTACACAAATTGCTACACTGAATTGTTCCCAAATTCTTTTGA 33047 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || ||| | || || ||||||||||| | |||||| || || || || || || Sbjct 33048 TTTGATTTCCTATTACAAGCATCCTTGTATAACATGTAAGGTGTTCCGGTTTCAACTTGC 33107 Query 111398 GATTTGAGAATAGCCTTCCAAAC 111420 |||| | |||||| |||||| Sbjct 33108 GATTCAATAATAGCAAACCAAAC 33130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626617075305600