Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq68 122 1e-22 seq18350 104 3e-17 seq57698 89.7 6e-13 seq8748 86.0 8e-12 seq51 86.0 8e-12 >seq68 Length=444459 Score = 122 bits (134), Expect = 1e-22 Identities = 443/671 (66%), Gaps = 38/671 (6%) Strand=Plus/Plus Query 13906 CTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCG--ATG 13963 ||| || | ||||||| | ||| || || || ||||||| ||| || ||| ||| Sbjct 24765 CTCGTTCACGAGGTTCATGAGGTCAGCGCCCGAAAAGCCCGGCGT--GCCGCGCGCAATG 24822 Query 13964 GCGTGTAGCTTCACATCGTCAGCCAA----CTTCTTGTCTCGGGCGTGGACACCCAAAAT 14019 | | | || | ||||||| ||||| | |||| |||||||| || || || Sbjct 24823 GTGCGCAGGTCCACATCGGG-GCCAAGCGGCACCTTG---CGGGCGTGCACGGTCAGGAT 24878 Query 14020 CTTCTCGCGACCGCGCACA-CTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTG 14078 ||||||||| || | | |||| || ||| ||||| || || ||||| || | Sbjct 24879 CTTCTCGCGGCCCTTGATGTCGGGGTTCGG-CACATGGATCTGGCGGTCGAAGCGGCCGG 24937 Query 14079 GGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGC 14138 |||| || || || ||| || | ||| | ||||| |||||||||| || | | | Sbjct 24938 GGCGCAGCAGCGCCGGGTCCAGCACATCCTTACGGTTGGTCGCCGCGACGATGATCACAC 24997 Query 14139 CCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGC 14195 | || || || || || |||||||| || || || || | || ||||||| Sbjct 24998 CT---TCATTTGCCTCGAACCCGTCCATCTCGACCAGAAGCTGGTTCAGTGTCTGTTCGC 25054 Query 14196 GTTCATCATT--CGCAGGC-ATACC-AC-CCGCACTGCGTTGCTTACCGACGGCGTCAAT 14250 |||| ||||| ||| | | ||||| || |||| | || || | |||||||| || Sbjct 25055 GTTCGTCATTGCCGCCGCCGATACCCACGCCGCGC-GCACGGC----CCACGGCGTCGAT 25109 Query 14251 TTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCAC 14310 || ||||| || ||||| || || ||| | ||| ||| || || || ||||| Sbjct 25110 CTCGTCGATAAACACGATGCAAGGCGCATTCTTCTTGGCCTGTTCGAACATGTCGCGCAC 25169 Query 14311 TCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGA 14369 | |||||||| || || ||||| ||||| || | || | || || | || || Sbjct 25170 ACGGGATGCACCGACCCCAACGAACATTTCCACGAAGTCGGAACCCGAG-ATGGTGAAGA 25228 Query 14370 AGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTT 14429 | || ||| | |||||||||||||| || ||||| ||||| || ||||| || || Sbjct 25229 ACGGCACGCCCGCCTCACCCGCGATGGCGCGCGCGAGCAGGGTTTTACCCGTGCCGGGGG 25288 Query 14430 TCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC---ACTGCCAAAGTAGCGTTCAG 14486 || | || || ||||| |||||| || | || || || ||| | | | | Sbjct 25289 GACCGACCAGCAGCGCACCTTTGGGGATCTTGCCGCCGAGAC-GCGAAAACTTC-TGCGG 25346 Query 14487 GTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAA 14546 |||| ||||| || ||||| ||||||| || ||||| || |||||||||| | | Sbjct 25347 GTTG-CGCAGGAATTCGACGATCTCTTCCAGCTCTTCCTTGGCCTCGTCGATGCCGGCCA 25405 Query 14547 CGTCACTGAAG 14557 ||||| |||| Sbjct 25406 CGTCATCGAAG 25416 >seq18350 Length=31362 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 142529 CCTGGTTGCGGGAAGTTCCTTAGAGCTCTAACTACCACCCTCATTTGGAAACTTTTGGGG 142588 ||| |||||||||||| ||| ||||||| || |||| | |||||||||||| | | | Sbjct 2596 CCTTGTTGCGGGAAGTCCCTGAGAGCTCAGACGACCATCTCTATTTGGAAACTTATAGAG 2537 Query 142589 GGATCTCGGTTAATTACCGAACCCGATGGTAAAAAGGTTAGAGATTGGATAATCCGCAGG 142648 || | ||| |||| |||| || |||||||||| || |||||||| |||||| |||| Sbjct 2536 AGAACCCGGGTAATGACCGGCTCCAATGGTAAAAACGTCTGAGATTGGGTAATCCTCAGG 2477 Query 142649 CGAGAACCTACGTTCGC 142665 ||| |||| ||| || Sbjct 2476 TGAGTTCCTAAGTTAGC 2460 >seq57698 Length=6283 Score = 89.7 bits (98), Expect = 6e-13 Identities = 230/343 (67%), Gaps = 12/343 (3%) Strand=Plus/Minus Query 14062 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 14121 ||| ||||| |||||||| || || | || | ||||| | ||| | |||||| ||||| Sbjct 5068 ACGGTCAAAACGACCTGGACGAAGTAATGCTTTATCAAGAACATCTACGCGGTTAGTCGC 5009 Query 14122 CGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAG-AGTTGAT 14180 || || || | | ||| | | ||||| |||||||||||| |||| | ||| | Sbjct 5008 AGCAATAACGATAACGCCTTCATTGCCTTCAAAACCATCCATCTCA-ACAAGCATTTGGT 4950 Query 14181 TGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCGA 14240 | | |||||| || || ||||||| || | ||| | || || || ||| | Sbjct 4949 TTAAGGTTTGCTCACGCTCATCATGACCACCACCAGTACCTGAACCACGATGACGACCAA 4890 Query 14241 CGGCGTCAATTTCATCGATGAAAACGATACATGG---TTGA-TTTTCACGGGCAACTTCA 14296 | || ||||| ||||| || || | |||||| || ||| |||| || |||| Sbjct 4889 CAGCATCAATCTCATCAATAAAGATGATACAAGGCGCATGACGTTTC----GCTTGTTCA 4834 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 || ||||| || || | | ||||| ||||| || ||||| || ||||| | | | Sbjct 4833 AACATATCACGAACACGCGATGCACCTACACCAACGAACATTTCGACAAAGTCAGAACCA 4774 Query 14357 GA-ACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCT 14398 || | | | || ||| || || |||| |||||| || || ||| Sbjct 4773 GAGATACT-GAAGAAAGGTACTTTAGCTTCACCAGCAATTGCT 4732 >seq8748 Length=68017 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 118751 AGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 118810 ||| || || | |||||| || ||||| || || || ||| || ||||| |||||||| Sbjct 32987 AGTATATTCAACAATTTCTGTACACAAATTGCTACACTGAATTGTTCCCAAATTCTTTTG 33046 Query 118811 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 118870 |||||| || | ||||| ||||||||||| | |||||| || || || || || ||| Sbjct 33047 ATTTGATTTCCTATTACAAGCATCCTTGTATAACATGTAAGGTGTTCCGGTTTCAACTTG 33106 Query 118871 GGACTTGAGAATAGC 118885 || | | |||||| Sbjct 33107 CGATTCAATAATAGC 33121 >seq51 Length=473680 Score = 86.0 bits (94), Expect = 8e-12 Identities = 232/349 (66%), Gaps = 12/349 (3%) Strand=Plus/Plus Query 14006 TGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGA 14065 ||||| || ||| | ||| || || |||||| || | | ||| || || ||| Sbjct 102551 TGGACTTTCAGAATATGCTCACGGCCACGCACATCTGGCAAGCCCACAACGACCTGACGG 102610 Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 || ||||||||||| || | | ||| | || | | ||| ||||| || || ||| Sbjct 102611 TCGAAGCGACCTGGACGTAATAAGGCAGCATCCAATACATCCGGACGGTTGGTGGCGGCG 102670 Query 14126 ATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 || | || || || || ||| || ||||| ||||||||| || | || || Sbjct 102671 ATAATAATAATACCT---TCATTACCATCGAAGCCGTCCATCTCAACCAGCATCTGGTTT 102727 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGG-CATACCACCCGCACTGCGTTGCTTACCGAC 14241 | |||||| || || ||||||| || | || ||| || | || ||| || || Sbjct 102728 AAGGTTTGCTCACGCTCATCATGGCCACCACCTAA-ACCGGCGCCACGCTGCCGGCCTAC 102786 Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTT--GATTTTCACGGGCAACTTCAAAG 14299 ||||||||| |||||||| || | || || ||| | |||| ||| || || Sbjct 102787 GGCGTCAATCTCATCGATAAAGATAATGCAAGGTGCCGCTTTTTT--GGCTTGCTCGAAC 102844 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 || || ||||| | | |||||||||||| |||||||| || ||||||| Sbjct 102845 ATGTCGCGCACCCGCGAGGCACCGACACCGACAAACATTTCAACAAAAT 102893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617041896416160