Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4663 91.5 2e-13 seq1499 89.7 6e-13 seq188 86.0 7e-12 >seq4663 Length=104512 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||||||||| || | |||||| | || | ||| ||||||| |||||||| ||| Sbjct 34537 CCTTCATCTCTGCTAATAAGTTCATTGGCGAAGGTTAGGACAGGCATCAGTCCACGATTC 34596 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||||||| ||||| | | || | ||| ||||| || ||||| ||||| ||||| Sbjct 34597 TTCAACCAGAAGATTGAAGCAAATGCACCCGAAAAGAATATTCCTTCTACACAAGCAAAT 34656 Query 74889 GCGAC 74893 || || Sbjct 34657 GCTAC 34661 >seq1499 Length=182485 Score = 89.7 bits (98), Expect = 6e-13 Identities = 218/325 (67%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 124713 TCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTC 124772 || |||||||| | || ||| |||| ||| |||| || | |||||| ||||| | Sbjct 181939 TCATGGTTGAATAATATACCATTACAAGCATACATGTTATAAGCCTCGCGATAGTTGACC 181880 Query 124773 GTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTG 124832 || ||||| || ||| | || |||| || |||| ||||| || || |||||||| || Sbjct 181879 GTAATCCAGTAGCCATATAGTTTGGCTACCGCATAAGGGCTACGCGGATAGAATGGCGTT 181820 Query 124833 TTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAG 124892 | ||| | || | ||| || | | ||| | | ||| |||||| || |||||| Sbjct 181819 GTCTCACTCTGCGGCACTTGTTGCACCAAGCCATATAGCTCAGAAGTAGATGCTTGATAG 181760 Query 124893 AATTTG-AATTTTGAAATAGAATTCGT--TTGACGAATTGCCTCCAAGATCCGAAGGGTT 124949 | | ||| || || || || | | ||||| ||||| || ||||||||||| Sbjct 181759 ATCCGGCAATGTTCAACCAG---TCCTAATAAACGAACCGCCTCTAAAATCCGAAGGGTC 181703 Query 124950 CCCATGGCGTCCACATTGGCGGTATACTC-GGGCTGATCAAAAGACAGTTTCACATGGGA 125008 |||| | | || | || || ||||| || ||| || || ||| | || ||||| || Sbjct 181702 CCCAAGCCATCAGCGTTAGCTGTATATTCTGGGGTG-TCGAAACTAACCTTAACATGCGA 181644 Query 125009 CTGGGCACCTAGGTTGTACACCTCG 125033 || || | ||||| || | |||| Sbjct 181643 TTGTGCGGCCAGGTTATAGATCTCG 181619 >seq188 Length=347077 Score = 86.0 bits (94), Expect = 7e-12 Identities = 229/345 (66%), Gaps = 14/345 (4%) Strand=Plus/Plus Query 53285 ACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTG 53344 ||||||||||||||||| || || || | || ||| ||||| ||||| |||| Sbjct 192635 ACGCCAACCCTGTTCAATGCCGGCACCCTGCGTCCGCAGCTGTCGTCCTGCTACCTGACC 192694 Query 53345 GCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATC 53404 || || ||| ||| | ||| ||||||||| | || |||| ||| | Sbjct 192695 ACGGTGCCGGACGACCTGTTCG---GCATCTACGGCGCCATCCAGGACAACGCCATGCTG 192751 Query 53405 TCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCA 53464 ||||||||| | || || |||| | | |||| | || || ||| ||| | Sbjct 192752 TCCAAGTGGGCCGGCGGCCTCGGCAACGACTGGACCCCGGTGCGCGCGCTGGGCTCCTAC 192811 Query 53465 ATCAAGGGGACGAACGGC--GTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACA 53522 |||||||| || |||||| ||||| | || | ||||| | ||| ||| |||| Sbjct 192812 ATCAAGGGCACCAACGGCAAGTCGC--AAGGCGTGGTGCCCTTCCTCAAGGTCGCCAACG 192869 Query 53523 ACACGGCCCGGTAC--GTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTA 53580 |||| || ||| ||||||||||| || ||||||||||| || || | ||| Sbjct 192870 ACACCGC--GGTCGCGGTCAACCAGGGCGGC---AAGCGCAAGGGCGCGGTCTGCGCCTA 192924 Query 53581 CCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 ||| || | |||||| |||||| |||||| |||||||||| Sbjct 192925 CCTGGAAACCTGGCACCTCGACATCGAGGAGTTCGTCGAGCTGCG 192969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545983149712800