Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq5 120 3e-22 seq5373 93.3 5e-14 >seq5 Length=869209 Score = 120 bits (132), Expect = 3e-22 Identities = 269/404 (67%), Gaps = 0/404 (0%) Strand=Plus/Minus Query 81508 CTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 81567 ||| || ||||| |||| ||| | | ||||| |||||||| || ||||||||||| Sbjct 711157 CTGCACGCCATAGTCCAGATGCCTTACCCGGTTCTCTTCTACACCGCGGTTATTTTTCAG 711098 Query 81568 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 81627 || || || ||| ||||||| |||||| | || || | || || || || || Sbjct 711097 TACCAGCAGCGATTCCACTTCCAGATGCCACAAGGGGTAGAACAGGGTGGCGGCACCACC 711038 Query 81628 ACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAAT 81687 ||| | || || || || || ||| ||||| ||||| ||||| || |||| || || Sbjct 711037 ACGCACACCGCCTTGCGAGCAGCTTTTTACTGCGGTCTGGAAATGCTTATAAAACGGGAT 710978 Query 81688 AACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAATCATACC 81747 | |||||||| |||| || | | || |||| ||| ||||| || Sbjct 710977 ACAGCCAGTATGAAAGGCTTCGCCATTACGGATTGGGCTACCTAAAGCGCGAATACGGCC 710918 Query 81748 TACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAATTGAAGCAGAAGCTTT 81807 | ||||||| ||||| || ||||| | || | |||| ||||| | | || | Sbjct 710917 TGCGTTAATACCAATACCTGCGCGCTGCGACACGTATTTTACAATGGCACTGGAGGTGGC 710858 Query 81808 ATTAATTGACTTCAATGAATCACCAGCTTCAATAACAACGCATGAACTAAACTGTCGAGT 81867 ||| || || | || |||||| ||||| | ||||| || || ||||| || || Sbjct 710857 ATTGATCGAATCCAGGCTGTCACCACACTCAATCAGTACGCAGGAGCTGAACTGACGGGT 710798 Query 81868 CGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCT 81911 || ||||| || | ||||||||| || |||| |||||||| Sbjct 710797 TGGGGTACGCACGCCCGACATAATAGGTGTCGGCAGTGAAATCT 710754 >seq5373 Length=95907 Score = 93.3 bits (102), Expect = 5e-14 Identities = 121/164 (74%), Gaps = 9/164 (5%) Strand=Plus/Plus Query 12039 AATTGGTCGAGGCAGTAGGGATCGAACCTACGACCTA--GGACTTAGA--AGGTCCTTGC 12094 || |||||| |||||||| |||||||||||||| || | | | |||| || Sbjct 61884 AAATGGTCGGAGCAGTAGGATTCGAACCTACGACCCCCTGGTCCCAAACCAGGT----GC 61939 Query 12095 TCTTCCTT-CTGAGCTATGCCCCGTAATTGGGGTGACCGATGGGAGTCGAACCCATGACT 12153 || || ||| ||||||| ||| ||||||||||| || |||| |||||||| ||| Sbjct 61940 ACTACCAGGCTGTGCTATGCTCCGAAATTGGGGTGAATGACGGGATTCGAACCCGCGACA 61999 Query 12154 ACGAGAATCACAATCTCGAGTTCTACCAACTGAACTACGGCCAC 12197 || ||||||||||| | | |||||||||||| |||| |||| Sbjct 62000 ACTGGAATCACAATCCAGGGCTCTACCAACTGAGCTACATCCAC 62043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534559345089120