Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2234 127 1e-24 >seq2234 Length=154088 Score = 127 bits (140), Expect = 1e-24 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || | || |||| ||| ||||| || ||||||||||||||||| || Sbjct 12105 GCCTCCTCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGA 12046 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| ||||| ||||| ||||| ||||||||||| || || || || Sbjct 12045 CAGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGG 11986 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCC 34656 | ||| || ||||| ||| ||||| |||||| | ||| || || | | | || Sbjct 11985 AATTCCTTCTTTGTCCTGGAT-TTTTGCTTTAACATTTTCAATGGTATCACTTGGT-TCG 11928 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| | || || |||||||| |||| || || |||||||| |||||| Sbjct 11927 ACTTCTAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCATG 11877 Score = 111 bits (122), Expect = 1e-19 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||||||| | ||| || | ||| ||||| || || |||||||| || || || Sbjct 11421 GCCTCCTCTAAGCCTCAAGACTAGATGTAGAGTAGATTCTTTCTGAATGTTGTAGTCCGA 11362 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| ||||| ||||| ||||| || |||||||||||||| || || Sbjct 11361 TAGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAAACGCTGTTGGTCTGGGGG 11302 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT--CTC 34655 | || || || ||| ||| |||||| || || | |||||| ||||| | Sbjct 11301 AATACCTTCTTTATCTTGGAT-TTTTGTCTTGACATTTTCTATTGTG---TCGCTAGGTT 11246 Query 34656 CAC-TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| ||| | |||||| || || || || || ||||| ||||| || ||||| Sbjct 11245 CACTTTCTAAGGTTATGGTCTTCCCTGTCAAAGTTTTGACAAATATTTGCAT 11194 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || ||||| ||||| || || ||||||||||| | |||| | |||||| Sbjct 12854 ACCAAGTGTAGAGTAGATTCCTTCTGGATATTATAATCTGACAAAGTTCTGCCATCTTCA 12795 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||||||||| ||||| ||||| | ||| || || || || | || || || || | Sbjct 12794 AGTTGTTTACCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATACCTTCTTTATCCTGG 12735 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTT 34675 || ||| | ||| || | |||||| || | | | || ||||| | ||| || |||| Sbjct 12734 AT-TTTGGCTTTCACATTCTCAATTGTATCACTAGGT-TCAACTTCTAAGGTGATGGTTT 12677 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || | ||||| |||||||| |||||| Sbjct 12676 TGCCAGTCAGGGTTTTAACAAAAATTTGCATG 12645 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | || | ||| || ||| |||||||||||||| || || || Sbjct 10736 CCACCTCTGAGCCTGAGAACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCCGAG 10677 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | |||||| || ||||| || || || ||||| || || || Sbjct 10676 AGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGGA 10617 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || ||||| ||||| |||| | ||| || || ||| || Sbjct 10616 ATTCCTTCTTTGTCCTGAATCTTGGCCTTTACATTTTCAATGGTATCACTAGGCTCAACC 10557 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || || || ||||| | |||||||||||||||||||| ||| Sbjct 10556 TCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACAAAAATCTGCATTTTG 10506 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || |||||| || ||||| || || ||||||||| Sbjct 10964 CCTCCTCTCAGTCGGAGAACCAGGTGAAGAGTGGATTCTTTTTGGATATTGTAATCTGAA 10905 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| || || || ||||| || | | ||| || || || || Sbjct 10904 AGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGG 10845 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||| || ||| ||||| || | | |||||||| ||||||| Sbjct 10844 ATACCCTCTTTATCTTGAATCTTGGCCTTCACATTTTCGATTGTGTCACTAGGCTCCACT 10785 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || | || |||||||| |||||||| Sbjct 10784 TCAAGAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCAT 10738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314038256698988