Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2234 129 5e-25 seq32926 116 3e-21 seq8853 105 6e-18 seq9669 87.8 2e-12 >seq2234 Length=154088 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| || || ||||| | || || | ||||| || || Sbjct 11421 CATGCAAATTTTCGTGAAAACCCTAACTGGCAAAACCATCACCTTGGAAGTAGAGCCTAG 11480 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | |||||| |||||||||||||||||||| || || || ||||| Sbjct 11481 TGACACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCAGATCA 11540 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | |||| | || || || || |||||||| || || |||| |||||||| Sbjct 11541 ACAGAGGCTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAA 11600 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||| || || || |||||||| ||| || | ||| | || || || Sbjct 11601 CATCCAAAAAGAATCTACATTACATTTAGTTCTGAGGTTGAGAGGAGGTAT 11651 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| ||||||||| | || ||||| || || || || Sbjct 10510 ATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATCACTCTAGAGGTTGAGCCTAGT 10569 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||| ||||||||||| || || || |||||| Sbjct 10570 GATACCATTGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 10629 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | || || |||||||||||||| | ||| | || || |||||| Sbjct 10630 CAACGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTCTCGGACTACAAC 10689 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||||||||| || || | ||| | ||| Sbjct 10690 ATTCAAAAGGAATCCACACTTCATCTAGTT 10719 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| ||||| |||||||| || ||| | || || | ||||| ||||| | Sbjct 10966 ATGCAAATATTCGTAAAGACTCTGACAGGGAAGACCATAACGTTAGAAGTTGAACCTAGC 11025 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| |||||| || || ||||||||||| || || || || Sbjct 11026 GACACAATAGAAAATGTCAAAACAAAAATCCAGGATAAAGAAGGCATCCCTCCAGACCAG 11085 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||| ||||| | ||||| || || | || |||||||| Sbjct 11086 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACTCTGTCTGATTACAAT 11145 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 || || || || || || | || |||||| |||| Sbjct 11146 ATCCAGAAAGAATCCACTCTTCACTTGGTTCTGCG 11180 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || |||||||| ||||| || || || | ||||| | ||||| ||||| Sbjct 11877 CATGCAAATTTTTGTAAAGACTCTAACAGGTAAAACAATTACATTAGAAGTCGAACCAAG 11936 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || ||| |||||| || ||||||||||| || || || ||||| Sbjct 11937 TGATACCATTGAAAATGTTAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCA 11996 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||||| | || || || ||| | ||||| | || | || ||||| || Sbjct 11997 GCAGCGTTTAATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTGTCGGATTATAA 12056 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 ||||||||| || || || | ||| ||||||| Sbjct 12057 CATTCAAAAAGAATCTACTCTGCATCTGGTTTT 12089 Score = 114 bits (126), Expect = 1e-20 Identities = 175/247 (71%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || || ||| | ||||| || ||||| || || Sbjct 11650 ATGCAAATCTTCGTCAAAACTCTTACTGGGAAGACAATTACACTAGAAGTTGAGCCAAGT 11709 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| ||||||||||| || ||||| || || || |||||| Sbjct 11710 GATACAATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATCCCTCCTGATCAA 11769 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || ||||| | || ||||| || | ||||| | || | || || |||||| Sbjct 11770 CAACGATTAATCTTTGCGGGCAAGCAGCTAGAAGATGGACGTACTCTGTCGGACTACAAC 11829 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || |||||||| || ||| | || ||||| ||| | | | || ||||| ||| | | Sbjct 11830 ATCCAAAAGGAATCAACCCTTCACTTGGTCTTGAGACTAAGAGGAGGCAT-GCAA--ATT 11886 Query 27228 TTTGTAA 27234 ||||||| Sbjct 11887 TTTGTAA 11893 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| ||||| || || || ||| | || || | ||||| ||||| Sbjct 12105 CATGCAAATTTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAAGTAGAACCAAG 12164 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | |||||| |||||||||||| ||||||||||| ||||| ||||| Sbjct 12165 CGATACAATTGAAAATGTCAAAACAAAAATTCAAGATAAAGAAGGCATTCCACCAGATCA 12224 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | | || | || || ||||| | ||||| | ||| | || |||||||| Sbjct 12225 GCAAAGGCTGATTTTTGCTGGTAAACAGCTTGAAGATGGGCGTACCCTGTCGGATTACAA 12284 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||| ||||| ||||| || | ||| | ||| Sbjct 12285 CATCCAAAAAGAGTCTACACTCCATCTAGTT 12315 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||| |||| || ||| | || || | ||| ||||| | Sbjct 11194 ATGCAAATATTTGTCAAAACTTTGACAGGGAAGACCATAACCTTAGAAAGTGAACCTAGC 11253 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| |||||| ||||| |||||||| || || || || ||| Sbjct 11254 GACACAATAGAAAATGTCAAGACAAAAATCCAAGATAAAGAAGGTATTCCCCCAGACCAA 11313 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || ||| | ||||| | || | || || |||||| Sbjct 11314 CAGCGTTTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTATCGGACTACAAC 11373 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||||| || || || || ||||| | || ||| Sbjct 11374 ATTCAGAAAGAATCTACTCTACATCTAGTCTTG 11406 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 |||||||||||||| ||||| || | ||||||| || ||| ||||||||||| Sbjct 12454 ATTACTCTTGAAGTTGAACCAAGTGATACCATTGAGAATGTGAAAGCTAAAATTCAAGAT 12513 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 |||||||| || || || ||||| ||| | ||||| | ||| || |||||| | ||||| Sbjct 12514 AAAGAAGGTATTCCTCCAGATCAGCAGAGGTTAATCTTCGCAGGTAAACAACTTGAAGAT 12573 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | ||| | || || || |||||||| || || || || | ||| | || ||| | Sbjct 12574 GGCCGAACCCTATCGGACTATAACATTCAGAAAGAATCAACTCTGCATCTAGTCTTGAGG 12633 Query 27204 TTGCGGGGTGGCAT 27217 | || || ||||| Sbjct 12634 CTCCGAGGAGGCAT 12647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| || || | || |||||||||||||| || Sbjct 10738 ATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACCATCACTCTTGAAGTGGAGCCTAGT 10797 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || |||||||| ||||| || || ||||| ||||| Sbjct 10798 GACACAATCGAAAATGTGAAGGCCAAGATTCAAGATAAAGAGGGTATCCCACCAGATCAG 10857 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || | ||||| | || |||| |||||||| Sbjct 10858 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGTACTCTTTCAGATTACAAT 10917 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||| || || || | || ||||| Sbjct 10918 ATCCAAAAAGAATCCACTCTTCACCTGGTT 10947 >seq32926 Length=14205 Score = 116 bits (128), Expect = 3e-21 Identities = 162/228 (71%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || |||||||| || || || | ||||| || ||||| || || Sbjct 14114 CATGCAGATATTCGTCAAAACTCTAACAGGAAAAACAATTACACTAGAAGTCGAGCCCAG 14055 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || ||| ||| || |||||||| ||||| |||||||| ||||| Sbjct 14054 TGATGCTATTGAAAACGTTAAAGCAAAGATCCAAGACAAGGAAGGAATACCACCAGATCA 13995 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||| | || | || || |||||||| | ||| | || || || || Sbjct 13994 ACAACGTCTCATTTTTGCTGG-------TTGGAAGATGGAAGAACCCTGTCTGACTATAA 13942 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || |||| ||||||||| | | || ||||| Sbjct 13941 TATTCAGAAGGAGTCTACTGTACACTTGGTTTTGAGACTTCGTGGTGG 13894 >seq8853 Length=67315 Score = 105 bits (116), Expect = 6e-18 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 135504 GAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGT 135563 ||||||| ||||||||||||||| |||||||||||||||| || || ||||| |||||| Sbjct 65988 GAGAAGGAAAAATGCACGGATTTCTGCGCATGTATTGGGCCAAGAAAATATTAGAATGGA 65929 Query 135564 CTGCATCG-CCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTA 135622 | || | |||| ||| | || || ||||| | |||||||||| | || ||| | Sbjct 65928 C-AAATAGCCCTGAAGAAGGCCTGGAATTTGCAATTTATTTTAATGATAAATATAGTCTG 65870 Query 135623 GATGGACGCGATTCAAATGGCTACGTAGGT 135652 ||||| || || ||||||| || || ||| Sbjct 65869 GATGGCCGTGACCCAAATGGTTATGTTGGT 65840 >seq9669 Length=62194 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || || || ||||| || | ||||| | || || || || |||||||| || | Sbjct 58666 AGGTATTCCTCCTGATCAGCAAAGATTAATTTTTGCTGGAAAGCAGTTGGAAGA-AGGAC 58724 Query 27149 GACCG-TTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGC 27207 || | |||| || |||||||||||||||||||| || ||||||||||| ||||| || Sbjct 58725 GAACTCTTTCTGACTACAACATTCAAAAGGAGTCTACTTTACATTTGGTCTTGCGCCTGA 58784 Query 27208 GGGGTGG 27214 | ||||| Sbjct 58785 GAGGTGG 58791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433966239796748