Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028659.1 Length=142987 Score E Sequences producing significant alignments: (Bits) Value seq51 118 1e-21 seq69521 100 3e-16 seq57648 86.0 6e-12 seq5373 84.2 2e-11 >seq51 Length=473680 Score = 118 bits (130), Expect = 1e-21 Identities = 210/301 (70%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 101359 TGAAAGTATATCTGGTAGGTGGCGCTGTTCGTGATGGTCTGCTGGGTCGTCCAGTTCATG 101418 || || | ||||| || || ||||| || || |||| |||||||| || || || Sbjct 460098 TGCAAATTTATCTTGTTGGCGGCGCGGTGCGCGATGAACTGCTGGGCTACCCCTTTACTG 460157 Query 101419 ACCGTGATTACGTGGTTGTGGGTGCAACACACGAAGAGATGATTGAAAAAGGTT-TCACC 101477 | ||||| || || || || || || | | | ||||| | ||| || | ||| | Sbjct 460158 AGCGTGACTATGTTGTGGTTGGCGCCAGCCCGGCGCAGATGCTGGAACTGGGCTATCAGC 460217 Query 101478 CAGGTTGGCGCTGCTTTCCCGGTGTACTTGCATCCTGAAACCAAAGAAGAATACGCACTG 101537 |||| || | ||| ||||| | | ||||||| ||||||||||||||||||| ||| Sbjct 460218 -AGGTAGGTAAAGATTTTCCGGTTTTCCTGCATCCGAAAACCAAAGAAGAATACGCCCTG 460276 Query 101538 GCCCGTACTGAGCGTAAAACTGGTGAAGGCCATACTGGCTTTGAGACCTTCTTCAGC-CC 101596 ||||| || ||||||||| |||| ||| |||| |||||| | | | | | || || Sbjct 460277 GCCCGCACCGAGCGTAAAGCTGGCAGTGGCTATACCGGCTTTAACGTC-TATGCGGCGCC 460335 Query 101597 GGATGTAACTCTGGAAGAGGATTTATCGCGTCGTGACCTGACGATCAATGCGATGGCTAA 101656 ||||| || ||||| | ||| | | || || || ||||| |||||||| || || || Sbjct 460336 TGATGTGACGCTGGAGCAAGATCTCGCCCGCCGCGATCTGACCATCAATGCTATCGCCAA 460395 Query 101657 A 101657 | Sbjct 460396 A 460396 >seq69521 Length=5113 Score = 100 bits (110), Expect = 3e-16 Identities = 204/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 101358 ATGAAAGTATATCTGGTAGGTGGCGCTGTTCGTGATGGTCTGCTGGGTCGTCCAGTTCAT 101417 ||| |||| ||| | ||||| || |||||||| ||| | | || || | ||| ||| Sbjct 2388 ATGCAAGTTTATTTAGTAGGCGGTGCTGTTCGAGATCATTTACTCGGCCATCCCTATCAC 2447 Query 101418 GACCGTGATTACGTGGTTGTGGGTGCAACACACGAAGAGATGATT-GAAAAAGGTTTCAC 101476 || ||||| || ||||| || || || | ||| | || ||| | |||| | | Sbjct 2448 GAAAAAGATTATGTAGTTGTTGGAGCTACCCCAGAACA-ATTATTAGCTGAAGGCTACCA 2506 Query 101477 CCAGGTTGGCGCTGCTTTCCCGGTGTACTTGCATCCTGAAACCAAAGAAGAATACGCACT 101536 | ||||| | ||| || || | ||| ||||| |||| ||||||||||||||||| Sbjct 2507 ACCTGTTGGAAAAGATTTTCCCGTTTTCTTACATCCAAAAACAAAAGAAGAATACGCACT 2566 Query 101537 GGCCCGTACTGAGCGTAAAACTGGTGAAGGCCATACTGGCTTTGAGACCTTCTTCAG-CC 101595 |||||||||||||||||| | |||| || || ||| ||| | | || ||| Sbjct 2567 TGCCCGTACTGAGCGTAAATCAGGTGTCGGTTATCATGGGTTTCA-ATTTTTCACAGATA 2625 Query 101596 CGGATGTAACTCTGGAAGAGGATTTATCGCGTCGTGACCTGACGATCAATGCGATGGC 101653 | ||| | || ||||||||| | ||||| || || ||||| ||||| ||||| Sbjct 2626 CCACTGTTAAACTTGAAGAGGATCTGATTCGTCGAGATCTCACGATTAATGCAATGGC 2683 >seq57648 Length=6294 Score = 86.0 bits (94), Expect = 6e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 64617 TGGTGCTCGCAGTAGGACTTGAACCCACGACCTTCTCCTTACAAGGGAGTTGCTCTACCA 64676 |||||| ||||| ||||| |||| |||||||| || ||||||| ||||||||||||| Sbjct 176 TGGTGCCGGCAGTGGGACTCGAACTCACGACCTACTGATTACAAGTCAGTTGCTCTACCA 235 Query 64677 ACTGAGCTATAC 64688 |||||||||||| Sbjct 236 ACTGAGCTATAC 247 >seq5373 Length=95907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 69319 ATTGCTGGATGCAAAGCCTTTATCTCTCAGACGTTCAAAGATGTCTTTTGCACGCGCGAC 69378 |||| |||| ||||||||||| || || || || ||||| | || |||||| | | Sbjct 20231 ATTGTTGGAAGCAAAGCCTTTGGCTTCCAAACCTTTTAAGATATTTTGTGCACGTTCTAG 20172 Query 69379 AGTGATAGAATCACCGTAGATCAGACCAATATGACTATCAAGAACCTTATAGCCCTTGGA 69438 || || || ||||| ||||||| ||| | | | || || || |||||||| | | Sbjct 20171 GGTAATCGAGTCACCATAGATCAAACCGACACGCTCATTCAGTACTTTATAGCCTTGAGC 20112 Query 69439 ATTAACTTCACCACCGAAAATATCCCATAAACATTGGACTGCACCT 69484 | || || || ||||| |||||||||||||| ||||||||| Sbjct 20111 TGTTTCTGTGCCGCCAAAAATTTCCCATAAACATTGCACTGCACCT 20066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456399832180320