Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq5 154 1e-32 seq51 145 7e-30 seq100896 105 6e-18 seq4 84.2 2e-11 >seq5 Length=869209 Score = 154 bits (170), Expect = 1e-32 Identities = 481/727 (66%), Gaps = 37/727 (5%) Strand=Plus/Minus Query 25324 CGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCATC 25383 || || ||||| | ||| || || | || | ||||| || ||||| | |||||| Sbjct 712059 CGCGGCGGCTCGATACCATTAGTCGCATTCGAGATCTGCGATGAGGTCTCAGATGGCATC 712000 Query 25384 ATCGTGGACAGCGTAGAGTTACGCAGTCCATGAATAGCGA-TGTCGATACGCAGCTTTTC 25442 | || || | ||| ||||||||||| |||| | | || | || ||||||||| || Sbjct 711999 AGCGCTGATAACGTTGAGTTACGCAGGCCAT-ACTGCTGAATATCTTTACGCAGCTGCTC 711941 Query 25443 CCAATCCATCTTCA--GTTTC-GCAGTGTGGAGGCC--ATCTACCTCTTTCTTGTAACGG 25497 |||||||| | | | ||| ||| | || ||| | || || || || Sbjct 711940 CCAATCCAGTTGTAAGGCTTCAGCAC-----AAACCTTATCCAGATCCTTTTTATAGGTA 711886 Query 25498 TCGATCGGCAGAATGCCCTGAGAGTATGTGGTCTCGTGGAAGAGATCACATTTGCCCAGT 25557 || ||||||||||| ||||| | || ||||| |||| || ||| ||| || Sbjct 711885 TCAATCGGCAGAATACCCTGCGCATAAGTGGTTTCGTTAAACTTCGGACAAGGGCCTTGT 711826 Query 25558 TCTTTTGCCAGGTCAACCGACGCTTCCAGCAGGTAATACTGGAATGCTTC--AGCCA-GT 25614 || | ||||| | ||||| |||| |||||| || ||||| | |||||| || | | Sbjct 711825 TCCTGCGCCAGTTTCACCGAGGCTTTCAGCAGATAGTACTGCATTGCTTCGAAGGTACGG 711766 Query 25615 TCGTGAACAGCATTTGCTGCACGAGG-ATCGCTGTACTTCAGGCCACGCTTCGCCAGGTA 25673 | | | ||||| || |||| ||| ||| || | |||| ||||||||||||| Sbjct 711765 TGGGTCAGGGCATTGGC----CGAGCCATCCGAGTATTTGACGCCATGCTTCGCCAGGTA 711710 Query 25674 ATATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCGCAGTTTAG--TCT-TCTCTGC 25730 || || |||| || ||||| ||||||||||| ||| ||| || | || Sbjct 711709 GTAGGCGTAGTTAATCACACCAATGCCCAGAGTACGACGCGCCATAGAACCTGATTGAGC 711650 Query 25731 CGCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAATGCACGAACCAGTGTA-C 25789 ||| ||| || || | ||||||||| | ||| | ||||| ||| || ||| | | | Sbjct 711649 AGCCGGAATAGGGTAATCCTGATAATCCAGCAGGCTATCCAGTGCCCGCACCGCTAAATC 711590 Query 25790 GGACA--GGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACAG 25847 | || || ||| | || ||||||| || | ||||||||| | ||| ||||| Sbjct 711589 TGCCAGCGGTTCA---AACTCGTCCAGCTGTTCAATGGCGCCGAGGTTAAAGGCTGACAG 711533 Query 25848 AGTACACAGGGCCACTTCCCCCGGGTCGTTCGGATCATTAATGTCCGTAATCGGATGTGT 25907 || || || || | || | |||| |||||||||| | | | ||| | || Sbjct 711532 TGTGCAGAGCGCAATCTCAC------CGTTTGGATCATTAACATGCTCCAGCGGTTTGGT 711479 Query 25908 CGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACCGGGGCCTGTTCGGGGTCGAA 25967 ||||| || ||||||| ||||||||| || ||||| ||| | | |||| || Sbjct 711478 CGGCAACGCAATTTCCAGACACAGGTTGCTTTGCCGTACCGGTGCCAGCGCCGGGTTAAA 711419 Query 25968 CGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAATACGGCCTGT-CTGAGAAC 26026 |||||| | || |||||||| || |||| |||| |||||| ||||| || ||| | | Sbjct 711418 CGGGCTGTGCGTATTGCAGTGATCGACGTTTTGCAGGTAAATGCGGCCGGTACTG-GCGC 711360 Query 26027 GCTCCTG 26033 ||||||| Sbjct 711359 GCTCCTG 711353 Score = 152 bits (168), Expect = 5e-32 Identities = 246/354 (69%), Gaps = 0/354 (0%) Strand=Plus/Minus Query 24282 CATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 24341 ||| || ||||| |||| | ||| || || ||| |||||||| ||||||||||| Sbjct 712924 CATAATATCGTCGAAGATCTTATGCGGTTCAGCACTGATATTACGGATAATATGGGTGTA 712865 Query 24342 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGT 24401 ||| ||| || || ||||| || ||||| || || | ||| |||||||| | Sbjct 712864 GCTGCGGCTGTGAATGGTTTCACTAAAGGCCCAGGTTTCAATCCAGGTTTCCAGCTCCGG 712805 Query 24402 GTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAG 24461 ||||| ||||| | ||| | |||||||| || ||||| || || ||||| || Sbjct 712804 AATAGACACAATCGGCAACAGGGCGACGTTCGGCGAGCGACCCTGCACTGAGTCCAGCAG 712745 Query 24462 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTA 24521 ||||||| ||||| |||||||| ||||| || || || || || || | | | | | Sbjct 712744 CGTCTGGTATTTCAGATTGCTGATAAAGATATGTTTTTCATGCTCAGGTAATTGCTGGAA 712685 Query 24522 GTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTT 24581 || || || || | |||| || |||||||| |||||||| || ||| ||||| Sbjct 712684 ATCAATCCGATCTTTACTGACGTCAATCTCTTCCGGCCGCCAGAAAAAGCTCAGCTGCTT 712625 Query 24582 CTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTT 24635 ||||||||||| || || | | | || ||||| ||||| || || ||||| Sbjct 712624 TTCGATCAGCTTTTCAAAAATCGGATACTTTTGCTGATCATAACGGGAGACGTT 712571 Score = 100 bits (110), Expect = 3e-16 Identities = 237/348 (68%), Gaps = 20/348 (6%) Strand=Plus/Minus Query 26551 TCACCAGACTCAATCAGTACGCAAGAACTAAACTGACGGGTCGGGGTACGAACACCCGCC 26610 |||||| |||||||||||||||| || || ||||||||||| |||||||| || |||| | Sbjct 710838 TCACCACACTCAATCAGTACGCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCCGAC 710779 Query 26611 ATGATCGGGGTCGGCAAAGACACCTTCATCAGCGATACGT----TC-TCGTACAGGTCAA 26665 || || || ||||||| || | ||| | ||||| |||| || | | | || | Sbjct 710778 ATAATAGGTGTCGGCAGTGAAATCTTAAACAGCG--ACGTCGCATCATAGAAGCGGCGCA 710721 Query 26666 CAATACGTTCCAGACGGGT-CTTTTTGTCTTCCTGTGA---CAAAAGGCCCATTGCAATC 26721 | ||| ||||| ||||| || || | | || | || |||| |||| | Sbjct 710720 C-ATA--GTCCAGCCGGGTGCTCTTCGGGTAATTGGCAAATAAACAGGC----GGCAACC 710668 Query 26722 AGCAT-CAGCGCCATCTGAGGGGATTCGTAAATCTCCCCGGTGACACGGTTTTTGACCAG 26780 ||||| || | | ||| | | ||| |||||||| ||||| || ||||||| ||||| Sbjct 710667 AGCATATAGAG-GAACTGGGCGCTTTCATAAATCTCACCGGTTACCCGGTTTTGTACCAG 710609 Query 26781 GTACTTGTCTTCGTACTGACGCATTGCTGCATAAGTGTAATCGAAGTCGCGGTCGTGAAC 26840 || || |||| |||| | || |||||| || ||| | |||||| || | Sbjct 710608 ATATTTACCTTCCAACTGCTTAACGGCAGCATAACTGAAATTCAGATCGCGGCTATGGTC 710549 Query 26841 GATCTTGTCATTCAGGAAAGCAATCTCATCACGGGTGTAATCGTCCAG 26888 ||| | | ||||||| | | | ||| || ||| ||||||| |||| Sbjct 710548 GATATAGCTGTTCAGGATATCCAGCTCTTCGCGGCTGTAATCAGCCAG 710501 >seq51 Length=473680 Score = 145 bits (160), Expect = 7e-30 Identities = 213/299 (71%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 16721 TTTGCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCT 16780 || ||||| ||||| ||||||| || |||||||| | ||| | || | |||||||| Sbjct 460395 TTGGCGATAGCATTGATGGTCAGATCGCGGCGGGCGAGATCTTGCTCCAGCGTCACATCA 460336 Query 16781 GG-GCTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGC 16839 || || | | | || | || || || || ||||| | ||||||||| ||||| Sbjct 460335 GGCGCCGCATAG-ACGTTAAAGCCGGTATAGCCACTGCCAGCTTTACGCTCGGTGCGGGC 460277 Query 16840 CAGGGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTG 16899 ||||||||| ||||| ||||| | ||||||||| |||| || || | ||| || || Sbjct 460276 CAGGGCGTATTCTTCTTTGGTTTTCGGATGCAGGAAAACCGGAAAATCTTTACCTACCTG 460217 Query 16900 CTCGAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTC 16959 || |||| ||| ||| ||||| | || ||| ||| |||||||| |||||||| || Sbjct 460216 CTGATAGCCCAGTTCCAGCATCTGCGCCGGGCTGGCGCCAACCACAACATAGTCACGCTC 460157 Query 16960 TTTGCTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTTCA 17018 | |||| |||||||||||| ||||||||||| || ||||| |||| || Sbjct 460156 AGTAAAGGGGTAGCCCAGCAGTTCATCGCGCACCGCGCCGCCAACAAGATAAATTTGCA 460098 >seq100896 Length=2131 Score = 105 bits (116), Expect = 6e-18 Identities = 271/408 (66%), Gaps = 15/408 (4%) Strand=Plus/Minus Query 23727 GTTGATCCACGGAATCGGGTTCTTGGTCGGCTTAC---CGATCAGTTCACCCAGGCCAAC 23783 ||||||||||||||| ||||| | ||||| ||| | || | ||||| || Sbjct 1537 GTTGATCCACGGAATAGGGTTACT------CTTACTTTCGAACTGTGTAGGTAGGCCTAC 1484 Query 23784 CGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACCTTTGTTCAG 23843 ||| |||||| | || ||||| || | ||| | | ||| ||||||| || Sbjct 1483 CGCAGTCATACGTGCATTAGTTATGTATTCAACGTATTGGCATAAGATATCTTTGTTAAG 1424 Query 23844 GCCGATCATCGAACCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCCTGCACCGATG 23902 || ||||| ||||| || ||||||||| | |||||| | ||||| || || | | || Sbjct 1423 ACCAATCATAGAACCATCCTTGAACAGGTATTCTGCCCAA-TCTTTTTCTTGTTCTGCTG 1365 Query 23903 CGTCGATAAAGCCCTGTCGTGCCTCTTCGTAGCAATCTTCTGCCACACGTGCAAA--CAG 23960 | || | ||| ||| ||| ||||| || | | |||| || ||| | | | Sbjct 1364 CTTCAACAAACATCTGAATTGCTTCTTCACGACACTGTGCTGCAACGATTGCCATTTCTG 1305 Query 23961 GTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGGACAAATGCAA 24020 | | || ||||| | ||||| |||| || | ||| || || || || || || Sbjct 1304 GGT--CGTCTTTACCTTCTTGCATAATGTTCAAGATGTGCTGTGTGCCAGATAAGTGTAA 1247 Query 24021 GGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTACGCCGCGCTC 24080 ||||||||||| || || || | || || || | ||||| ||| | | ||||| Sbjct 1246 CGCTTCATCACGGGCGATTAGCTTGATGATTTTTGCATTACCTTCCATCAATTCACGCTC 1187 Query 24081 ACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTC 24128 | ||||||| || || || || ||||| || |||||||| |||||||| Sbjct 1186 AGCGAAAGCAAATGAACAAGCAAAGCTTACATAGAAACGAATCGCTTC 1139 >seq4 Length=924746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 52356 CGGTGTATAGCGCAGTCTGGTAGCGCGAATGCTTTGGGAGCATTAGGTCGTTGGTTCGAG 52415 ||| ||||||||||||| ||||||||| ||||||||||||| | |||| ||||||| Sbjct 715378 CGGGGTATAGCGCAGTCCGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGGGGGTTCGAA 715437 Query 52416 TCCAACTACACCGACCAAA 52434 ||| |||| ||||||||| Sbjct 715438 TCCCTCTACCCCGACCAAA 715456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477935204507520