Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq5 145 9e-30 seq23 131 2e-25 seq1110 104 3e-17 >seq5 Length=869209 Score = 145 bits (160), Expect = 9e-30 Identities = 310/463 (67%), Gaps = 0/463 (0%) Strand=Plus/Minus Query 147730 GGGCTGAATAATGTGATGTAGTCATTCTTAATAAGACGTTCTAACATCAGGTCATTAATC 147789 |||||||| || ||||| ||||||| ||||| || || | |||||||| |||| | Sbjct 711216 GGGCTGAACAAGGTGATATAGTCATCTTTAATCAGGCGCTGATACATCAGGCGGTTAAAC 711157 Query 147790 TGGACGCCATAATCTAAGTGACGAATACGGTTCTCGTCTACACCTTTATTGTTTTTCAGA 147849 || |||||||| || | || | | |||||||| |||||||| || |||||||| Sbjct 711156 TGCACGCCATAGTCCAGATGCCTTACCCGGTTCTCTTCTACACCGCGGTTATTTTTCAGT 711097 Query 147850 ACGAGAAGGTTTTCGACTTCTAAATGCCAAATTGGATAGTACAATGTTGCTGCACCACCA 147909 || || || ||| ||||| | |||||| | || ||| ||| || || ||||||||| Sbjct 711096 ACCAGCAGCGATTCCACTTCCAGATGCCACAAGGGGTAGAACAGGGTGGCGGCACCACCA 711037 Query 147910 CGTACACCACCTTGGGAACATGATTTAACAGAAGCTTGAATAGTTTTCCAGAATGGAATC 147969 || ||||| ||||| || || ||| || | | || | | || | || || || Sbjct 711036 CGCACACCGCCTTGCGAGCAGCTTTTTACTGCGGTCTGGAAATGCTTATAAAACGGGATA 710977 Query 147970 ACGCCTGTGTGCTTAACTTCACCATGTCCAATCTTAGAACCTTCTGCACGAATCATACCA 148029 ||| || || |||| |||| | || |||| || ||||| || Sbjct 710976 CAGCCAGTATGAAAGGCTTCGCCATTACGGATTGGGCTACCTAAAGCGCGAATACGGCCT 710917 Query 148030 GCGTTAACACCAATACCAGCTCGTTTACTGATGTACTTAATGATTGAAGCATTTGTGGTA 148089 ||||||| ||||||||| || || | | ||| || | || | | |||| | Sbjct 710916 GCGTTAATACCAATACCTGCGCGCTGCGACACGTATTTTACAATGGCACTGGAGGTGGCA 710857 Query 148090 TTAATCGAATCCAGTGAATCACCACCTTCAATAACAACACAACTCGAGAATTGACGAGTC 148149 || ||||||||||| ||||||| ||||| | || || ||| ||||| || Sbjct 710856 TTGATCGAATCCAGGCTGTCACCACACTCAATCAGTACGCAGGAGCTGAACTGACGGGTT 710797 Query 148150 GGAGTACGAACACCTGCCATAATTGGAGTTGGCAGTGAAATCT 148192 || ||||| || || | |||||| || || ||||||||||||| Sbjct 710796 GGGGTACGCACGCCCGACATAATAGGTGTCGGCAGTGAAATCT 710754 Score = 82.4 bits (90), Expect = 9e-11 Identities = 210/320 (66%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 145701 AGAATAATTTCGTCGAAGATTTTAGCCGGGTCCGCGAACAGGTTACGCATGATATGTGTA 145760 || ||||| ||||||||||| ||| ||| || || | ||||| || ||||| || Sbjct 712926 AGCATAATATCGTCGAAGATCTTATGCGGTTCAGCACTGATATTACGGATAATATGGGTG 712867 Query 145761 TAAGAACGGCTATGGATAGTCTCAGAGAACGTCCAAGTAGCAACCCATGTGTCTAATGCC 145820 || ||||| || || || ||| || | ||| || ||| ||| || || | || Sbjct 712866 TAGCTGCGGCTGTGAATGGTTTCACTAAAGGCCCAGGTTTCAATCCAGGTTTCCAGCTCC 712807 Query 145821 GGATCGGAAATCAAAGCCATCAGGACCGCTGCAGGCGCACGACCTTGAATAGAATCCAAC 145880 ||| || | | | || |||| | | |||| ||||| || | || |||| | Sbjct 712806 GGAATAGACACAATCGGCAACAGGGCGACGTTCGGCGAGCGACCCTGCACTGAGTCCAGC 712747 Query 145881 AGACTTTGGTATTTAAGATTAGAAATAAAGATGTCTTGCTGGTGATCGGCTAATTTGTCG 145940 || | |||||||| ||||| |||||||| | || | || || | ||||| | | Sbjct 712746 AGCGTCTGGTATTTCAGATTGCTGATAAAGATATGTTTTTCATGCTCAGGTAATTGCTGG 712687 Query 145941 AATTGAGCCTTATCGGTCATCAAGTTAACTTCTTCAGGTCGCCAGAAGAAACTCAATTGC 146000 || | | | ||| | | | || || ||||| || |||||||| || |||| ||| Sbjct 712686 AAATCAATCCGATCTTTACTGACGTCAATCTCTTCCGGCCGCCAGAAAAAGCTCAGCTGC 712627 Query 146001 TTTTCGGTGAGGTCTTCAAA 146020 |||||| | || | |||||| Sbjct 712626 TTTTCGATCAGCTTTTCAAA 712607 >seq23 Length=559261 Score = 131 bits (144), Expect = 2e-25 Identities = 240/344 (70%), Gaps = 12/344 (3%) Strand=Plus/Minus Query 139157 GCATTGCATCAGTAGCAACCTTCACAGAACCATTTGTTCCATTTTTAAAGCCAACGCACA 139216 ||||||||| || ||||| | | ||| | ||| ||||||||||||||||| Sbjct 518088 GCATTGCATTCGTTGCAACTGTTAAGCCACCGTCTGTACCATTTTTAAAGCCAACAGGTG 518029 Query 139217 TAGGCAGGCCTGAAGCAATTTCACGGTGTGTCTGACTCTCGGTTGTACGAGCGCCGATTG 139276 || | || |||| |||||||| ||||| ||||| || |||||||||||||| || | Sbjct 518028 AAGATAATCCCGAAGACATTTCACGATGTGTTTGACTTTCTGTTGTACGAGCGCCAATCG 517969 Query 139277 CGACCCAAGAGA--AAATACCTGTAAGATACTTAATCGTGAAT--GGGTCCAACACTTCA 139332 | |||||| | |||| | || || |||| | |||| | || || | ||||| Sbjct 517968 CTGACCAAGAAATTAAAT-CTTGGTAG-TACTGAG--GTGAGTTAGGATCAAGTGCTTCA 517913 Query 139333 GTCGCTAGTGGAAGGCCTAAGCTTAAT--AGTTCTAAGCAAAGTTCGCGAGCCATTTCGA 139390 || || || | ||| || || | ||||| |||| | ||| | || | | Sbjct 517912 GTTGCACAAGGCAAACCTTT--TTCATTTAATTCTAGTAAAAGACCACGACCAATATGTA 517855 Query 139391 GCCCACGGTTTATGTCAAATGAGCCATTCAATTCTGGGTCGTTAATGAAACCTTTCCAAC 139450 ||| | || | || ||| |||||| || ||||| ||||| ||||||||||||| Sbjct 517854 ACCCTTTTTCAATATTGAAAGAGTCATTCATATCAGGGTCATTAATTAAACCTTTCCAAC 517795 Query 139451 CTACAGTTGTTCTTGGTTTCTCAAAATAAACACGCATAACCAAA 139494 |||| ||||| | |||||| |||||||||||||||||||| ||| Sbjct 517794 CTACTGTTGTACGTGGTTTTTCAAAATAAACACGCATAACTAAA 517751 >seq1110 Length=205023 Score = 104 bits (114), Expect = 3e-17 Identities = 129/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 139408 AATGAGCCATTCAATTCTGGGTCGTTAATGAAACCTTTCCAACCTACAGTTGTTCTTGGT 139467 || ||| |||||| || ||||| || || ||||||||||| || || || || | |||| Sbjct 196607 AAAGAGTCATTCATGTCAGGGTCATTGATTAAACCTTTCCAGCCGACGGTGGTACGTGGT 196666 Query 139468 TTCTCAAAATAAACACGCATAACCA---AAAGAAGATTTGGAAATTGTTTTTGTACTTCG 139524 ||||| |||||||||||||| || | |||| || | || || || | ||| Sbjct 196667 TTCTCGAAATAAACACGCATTACAAGGTAAAGCGTATCTTTAACTTTTTCGCTCAATTCT 196726 Query 139525 GCTAAACGTTCGCCGTATTCGAGAGCAGCTTTAGGGTCATGAATTGAACAAGGGCC 139580 ||||| || | ||||| | ||||||||||| ||||| |||||||||||||| Sbjct 196727 TTCAAACGATCAGCATATTCATGCGCAGCTTTAGGATCATGGATTGAACAAGGGCC 196782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567049181827680