Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq128 150 7e-32 >seq128 Length=380166 Score = 150 bits (166), Expect = 7e-32 Identities = 248/355 (70%), Gaps = 2/355 (1%) Strand=Plus/Minus Query 16496 AATCGCACTCCGTTGAAGTGAATAAGATGAGAAGGTGCATCAGCCACCCATACCTCTGTT 16555 |||| ||||| || || ||||| | |||| ||| ||||| || ||||| || || ||| Sbjct 107942 AATCTAACTCCATTAAAATGAATTAAGTGAGTAGGGGCATCCGCAACCCAGACTTCAGTT 107883 Query 16556 TCCCATGCGATTTCACCAAGATATCGCCCCATGATGGAGCGATTTGGAAAAGCGGTCACA 16615 ||||| || || ||||| | |||| || ||| |||| || | ||||| || || ||| Sbjct 107882 TCCCAAGCAATATCACCTAAATATTTCCGCATAATGGCACGGTCAGGAAAGGCTGTGACA 107823 Query 16616 TAGACAAGTCCGGCTGTTGATCCGGCAAACAGCCTGGCAAGCTCAGCATGCCGCTTCCCA 16675 || || | || || | ||| ||||| | | ||| ||||| |||| || || ||| Sbjct 107822 TACACTAAACCAGCAGATGAGTTTGCAAATAACTGGGCCAGCTCCTCATGACGTTTGCCA 107763 Query 16676 TCAACCGGTCCATGACTGGTGACAGACTCAACCAGTAGCAGCCAGTTTTTCGCAGTAAAA 16735 || || || ||||||||||| || || |||| || | | ||| | ||| ||| |||| Sbjct 107762 TCTACAGGACCATGACTGGTAACTGATTCAATAAGAATTAACCAATCTTTTTCAGAAAAA 107703 Query 16736 TGTAGCACCACATCTGGCATTTTACCGTGTGAATCCACATCAACACCTAGCCCGGCCAGC 16795 | | || ||||||||||| ||||||||| | | || |||||| | || | Sbjct 107702 TACAAAACGACATCTGGCATCTTACCGTGTTTGTTGATTGTTACTCCTAGCTCTGCTAAT 107643 Query 16796 AGTGGAGCGTCGAAGTAGCCCCACTTTT-CGCCAGTGTCGCCAGCATAGACCAGC 16849 || ||| || | |||| |||||| ||| || ||||||||||||| |||| Sbjct 107642 AGAACTTCGTTAAAAT-GCCCGACTTTTGAGCCTGTATCGCCAGCATAGATCAGC 107589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200556881638352