Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq4461 149 2e-31 seq737 96.9 9e-16 seq92432 80.6 7e-11 >seq4461 Length=107335 Score = 149 bits (164), Expect = 2e-31 Identities = 272/391 (70%), Gaps = 8/391 (2%) Strand=Plus/Minus Query 39552 CGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCA 39611 |||||||||||| ||||| || | ||| | |||||||| || ||| |||||||| Sbjct 32830 CGGCACCCATTCCGATTTCAGGCTGCGGAACAGCCGCTCCATCGGCGAGTTGTCCCAGCA 32771 Query 39612 GTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTG 39671 ||| ||||| |||||||| || ||| ||||||||| | |||||| ||||||||||| Sbjct 32770 GTTGCCACGACGACTCATGCTTTGCTCGATCCGGTAGCGCCACAGGCGCTGCCGGAACTT 32711 Query 39672 CCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCA-CCCCGACGGGCTTACCAC 39730 || ||||| ||| |||| ||| ||||| ||||||||||| ||| ||| | || | Sbjct 32710 CCGGCTCGCATACTGACCGCCCTGATCAGAGTGGAACATCAGGCCCTGCGGAC-GAC--C 32654 Query 39731 GGGTTTCCCAT--GCCATTTCCAGTGCTTTCATGGTAAG-CCTGCTGTCCGGCGAGAACG 39787 | ||| | ||| ||||| ||||| || | || || | || ||| ||| | || Sbjct 32653 GCGTTGCTCATAGGCCATGTCCAGCGCCTGCACCACCAGATCAGC-GTCTGGCCTGGTCG 32595 Query 39788 ACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCC 39847 | | ||||||||||| || | |||||| || || || | || ||||| || Sbjct 32594 AGAACGCCCAGCCCACGACCCGTCGCGTGAACAGATCCAGCACCGCCGCCAGGTAATGCC 32535 Query 39848 AGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCA 39907 |||| | | ||||| ||||| | || |||||||| |||||||| ||| | | Sbjct 32534 AGCGGCCCTCTGCCCAGACGTAGGTGATGTCGCCGCACCAGACCTGATTGGGCGCATCGA 32475 Query 39908 CGGCGAACTGCCGTTCAAGGTAGTTAGGGAT 39938 | |||| ||||| | || ||| ||||| Sbjct 32474 CCACGAATTGCCGGTTGAGACGGTTCGGGAT 32444 Score = 149 bits (164), Expect = 2e-31 Identities = 272/391 (70%), Gaps = 8/391 (2%) Strand=Plus/Minus Query 16927 CGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCA 16986 |||||||||||| ||||| || | ||| | |||||||| || ||| |||||||| Sbjct 32830 CGGCACCCATTCCGATTTCAGGCTGCGGAACAGCCGCTCCATCGGCGAGTTGTCCCAGCA 32771 Query 16987 GTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTG 17046 ||| ||||| |||||||| || ||| ||||||||| | |||||| ||||||||||| Sbjct 32770 GTTGCCACGACGACTCATGCTTTGCTCGATCCGGTAGCGCCACAGGCGCTGCCGGAACTT 32711 Query 17047 CCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCA-CCCCGACGGGCTTACCAC 17105 || ||||| ||| |||| ||| ||||| ||||||||||| ||| ||| | || | Sbjct 32710 CCGGCTCGCATACTGACCGCCCTGATCAGAGTGGAACATCAGGCCCTGCGGAC-GAC--C 32654 Query 17106 GGGTTTCCCAT--GCCATTTCCAGTGCTTTCATGGTAAG-CCTGCTGTCCGGCGAGAACG 17162 | ||| | ||| ||||| ||||| || | || || | || ||| ||| | || Sbjct 32653 GCGTTGCTCATAGGCCATGTCCAGCGCCTGCACCACCAGATCAGC-GTCTGGCCTGGTCG 32595 Query 17163 ACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCC 17222 | | ||||||||||| || | |||||| || || || | || ||||| || Sbjct 32594 AGAACGCCCAGCCCACGACCCGTCGCGTGAACAGATCCAGCACCGCCGCCAGGTAATGCC 32535 Query 17223 AGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCA 17282 |||| | | ||||| ||||| | || |||||||| |||||||| ||| | | Sbjct 32534 AGCGGCCCTCTGCCCAGACGTAGGTGATGTCGCCGCACCAGACCTGATTGGGCGCATCGA 32475 Query 17283 CGGCGAACTGCCGTTCAAGGTAGTTAGGGAT 17313 | |||| ||||| | || ||| ||||| Sbjct 32474 CCACGAATTGCCGGTTGAGACGGTTCGGGAT 32444 >seq737 Length=236300 Score = 96.9 bits (106), Expect = 9e-16 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 16927 CGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCA 16986 ||||||| |||| |||||||| | ||| | |||||||| || ||| |||||| | Sbjct 90755 CGGCACCAATTCCGATTTCAGACTGCGGAACAGCCGCTCCATCGGCGAGTTGTCCCAGAA 90814 Query 16987 GTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTG 17046 ||| || || ||||| || |||||| ||||||||| | ||||| | ||||||||| Sbjct 90815 GTTGCCGCGACGACTTATGCTCTGCGCGATCCGGTAGCGTCACAGGCGCGGCCGGAACTT 90874 Query 17047 CCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCA 17087 || || | ||| || | || ||||| ||||||||||| Sbjct 90875 CCGGCATGCATATTGCCCACCCTGATCCGAGTGGAACATCA 90915 Score = 96.9 bits (106), Expect = 9e-16 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 39552 CGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCA 39611 ||||||| |||| |||||||| | ||| | |||||||| || ||| |||||| | Sbjct 90755 CGGCACCAATTCCGATTTCAGACTGCGGAACAGCCGCTCCATCGGCGAGTTGTCCCAGAA 90814 Query 39612 GTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTG 39671 ||| || || ||||| || |||||| ||||||||| | ||||| | ||||||||| Sbjct 90815 GTTGCCGCGACGACTTATGCTCTGCGCGATCCGGTAGCGTCACAGGCGCGGCCGGAACTT 90874 Query 39672 CCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCA 39712 || || | ||| || | || ||||| ||||||||||| Sbjct 90875 CCGGCATGCATATTGCCCACCCTGATCCGAGTGGAACATCA 90915 >seq92432 Length=3016 Score = 80.6 bits (88), Expect = 7e-11 Identities = 227/344 (66%), Gaps = 5/344 (1%) Strand=Plus/Minus Query 39556 ACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTT 39615 |||||||| | || | ||| || || ||||||||||| | |||| || || Sbjct 2273 ACCCATTCTGTTTTTAAACTTCTAAATGGACGCTCCATTGGCGCACTGCCCCAACAATTC 2214 Query 39616 CCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTG 39675 || || ||||||||||| ||| ||||| || | ||||||| || | |||| || Sbjct 2213 CCTCGGCGACTCATACTTTGCTCTATCCGTTAACACCACAGTCTTTGTTGAAACTTTCTT 2154 Query 39676 CTCGTATAATGACTGCCTTGATCGCTG-TGGAACATCACCCCGACGGGCTTACCACGGGT 39734 | || ||||||||||||| ||| || ||||||| || || || || || Sbjct 2153 GCGTTGTACTGACTGCCTTGAT--CTGATGAAACATCAATCCAGATGGTTTGCCTCGCTG 2096 Query 39735 TTCCCATGCCATTTCCAGTGCTTTCAT-GGTAAGCCTGCTGTCCGGCGAGAACGACATGG 39793 ||| |||| | || | |||||| || |||| | | |||| ||| ||||| | Sbjct 2095 TTCGTATGCTCTATCTAATGCTTTAATAACTAAGTCAG-TGTCAGGCTTATCAGACATTG 2037 Query 39794 CCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCT 39853 |||| || || | || || | |||| || ||| || || || | | | | Sbjct 2036 CCCAACCAACCACACGGCGAGCAAATAAATCGATAATAACAGCCAGATAAGACTATTTTT 1977 Query 39854 TACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTT 39897 |||||||||| |||||||| | ||| || ||||| || |||||| Sbjct 1976 TACCCGTCCAAATATAGGTGATATCCCCACACCAAACTTGATTT 1933 Score = 80.6 bits (88), Expect = 7e-11 Identities = 227/344 (66%), Gaps = 5/344 (1%) Strand=Plus/Minus Query 16931 ACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTT 16990 |||||||| | || | ||| || || ||||||||||| | |||| || || Sbjct 2273 ACCCATTCTGTTTTTAAACTTCTAAATGGACGCTCCATTGGCGCACTGCCCCAACAATTC 2214 Query 16991 CCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTG 17050 || || ||||||||||| ||| ||||| || | ||||||| || | |||| || Sbjct 2213 CCTCGGCGACTCATACTTTGCTCTATCCGTTAACACCACAGTCTTTGTTGAAACTTTCTT 2154 Query 17051 CTCGTATAATGACTGCCTTGATCGCTG-TGGAACATCACCCCGACGGGCTTACCACGGGT 17109 | || ||||||||||||| ||| || ||||||| || || || || || Sbjct 2153 GCGTTGTACTGACTGCCTTGAT--CTGATGAAACATCAATCCAGATGGTTTGCCTCGCTG 2096 Query 17110 TTCCCATGCCATTTCCAGTGCTTTCAT-GGTAAGCCTGCTGTCCGGCGAGAACGACATGG 17168 ||| |||| | || | |||||| || |||| | | |||| ||| ||||| | Sbjct 2095 TTCGTATGCTCTATCTAATGCTTTAATAACTAAGTCAG-TGTCAGGCTTATCAGACATTG 2037 Query 17169 CCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCT 17228 |||| || || | || || | |||| || ||| || || || | | | | Sbjct 2036 CCCAACCAACCACACGGCGAGCAAATAAATCGATAATAACAGCCAGATAAGACTATTTTT 1977 Query 17229 TACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTT 17272 |||||||||| |||||||| | ||| || ||||| || |||||| Sbjct 1976 TACCCGTCCAAATATAGGTGATATCCCCACACCAAACTTGATTT 1933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131877137621600