Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq96199 244 1e-59 seq5 150 2e-31 seq23 131 2e-25 seq7 86.0 6e-12 >seq96199 Length=2664 Score = 244 bits (270), Expect = 1e-59 Identities = 475/704 (67%), Gaps = 19/704 (3%) Strand=Plus/Minus Query 139887 AAATGGGTATTTAATTGCAGGGTGATATTGATAATCTTGTATCTCAAAATCATCTACGGT 139946 ||| || || ||||||||| |||| | |||||| || || |||||||||||| || Sbjct 2604 AAACGGATACTTAATTGCATCGTGACACTGATAACCTACTACTTCAAAATCATCTTTTGT 2545 Query 139947 AACCCAGGTTTCAATATCTTCTAAAGATTGAATGTTATCATTAATAATAAGTTTTGGTGC 140006 ||||||| ||||||| |||||||| |||| ||| || || || | | || ||| | Sbjct 2544 AACCCAGCTTTCAATGTCTTCTAATGATTTAATATTTGGGTTTATTTTTAATTCTGGCGA 2485 Query 140007 CTCAAATGGCTCTCTAGAGATATGT---TCTGGAACCAATTTAAGTTGGTCTTCATAGAT 140063 | | || ||||||| | ||| || | | ||| | |||||||| |||||| || Sbjct 2484 CGCGAAAGGCTCTCGCTTAAGTTGTACATCACGCATCAACTCAAGTTGGTTTTCATAAAT 2425 Query 140064 ATGAGCATTTGTAATTTTATGAAATACACGCCCAAATTTATTGCCGGTAATTTGTGCCAT 140123 ||| ||||| | ||||||||| | | || ||||| ||||| |||||||| | Sbjct 2424 ATGCGCATTCGCTATTTTATGATACGCCTTACCCGGTTTATGTCCGGTTATTTGTGCAAC 2365 Query 140124 TAAGCGTAATAAAACATAACACTGTACCATATTAAAATTTAATCCCAATGGGACATCACA 140183 ||| | ||| ||| |||| || | |||||| || | |||| || |||||||| Sbjct 2364 TAAAGCAAGTAACACAAAACATTGAATTTGATTAAAGTTCAGACCCAGCGGCACATCACA 2305 Query 140184 TGATCTTTGGTATGAAGTTAAATATAATGTG-CTATTAACTAAAGAAAAATTATGTGTAT 140242 | ||||||||| ||||| ||||| || | ||| |||||||| | || || | Sbjct 2304 GCTACGTTGGTATGATGTTAAGTATAAAGTATCGCCCAAC-AAAGAAAAGGTGTGCGTGT 2246 Query 140243 GCATACATGGACGCAAACATCCTAAGTCAAATTCACCTGGGTTCCAGAAAGTAATAATTT 140302 ||||||| || || ||||| |||| |||||||||||||| || | ||||| | |||| Sbjct 2245 GCATACAAGGGCGTAAACAACCTAGCTCAAATTCACCTGGATTATAAAAAGTGACGATTT 2186 Query 140303 CTCCACGGTCATCAATACCTTGGCTTAAATTATC-ATATACTTTTCTTAGTTGGTCTA-- 140359 | || || |||||||| |||| ||| ||||| ||| |||||| | || || || | Sbjct 2185 CACCGCGATCATCAATTCCTTTCGATAAGTTATCGATA-ACTTTTTTAAGCTGATCAAGG 2127 Query 140360 ----------CAGAACCATTCCAAGAACGTCCTTGGACACCGTAAACACGACCCATATCA 140409 ||| | | |||| || ||||| ||||| || ||||| ||||||||| Sbjct 2126 TGGCTACCATCAGGGCGTTGCCAACTGCGCCCTTGAACACCATACACACGGCCCATATCA 2067 Query 140410 TCGGGTCCTTTACGATTAGGATTATTTAACCATGATTCGTTNNNNNNNNNNNNNNNNNNC 140469 || || |||||| ||||| | | ||| | || ||| | Sbjct 2066 TCCTCACCACTACGATGCGGATTTTCAAGCCACGCTTTGTTCTCGTTCGCGTTGGCATTC 2007 Query 140470 CATGTATTACACCCAATCTCACGAAATTGTGCAGCACTTGAATACCCACGAAGATATCCT 140529 || || |||| || || |||||||| |||||||| || || ||||| | ||| || Sbjct 2006 CAAGTCATACAGCCGATATCACGAAACTGTGCAGCGCTGTCGTAACCACGTAAATAACCC 1947 Query 140530 AGCAGTTCAGCAATAGCAGCTTTATAAAAACTTTTACGTGTAGT 140573 || | || || || || ||||| ||||| || || || || || Sbjct 1946 AGTAACTCCGCTATCGCCGCTTTGTAAAAGCTCTTTCGCGTGGT 1903 >seq5 Length=869209 Score = 150 bits (166), Expect = 2e-31 Identities = 359/545 (66%), Gaps = 24/545 (4%) Strand=Plus/Minus Query 140047 AGTTGGTCTTCATAGATATGAGCATTTGTAATTTTATGAAATACACGCCCAAATTTATTG 140106 || || | ||| || | |||||||| | ||||||||| | | || ||| | | Sbjct 100548 AGCTGATTTTCGTAAACGTGAGCATTGGCAATTTTATGGTAGGCCTTACCCGCTTTGTGG 100489 Query 140107 CCGGTAATTTGTGCCATTAAGCGTAA-TAAAACATAACACTGTACCATATTAAAATTTAA 140165 ||||| ||||| ||||| ||| | | ||| || |||| |||||| ||||||||| | Sbjct 100488 CCGGTGATTTGCGCCAT-AAGTGCCAGTAACACGAAACATTGTACCTGATTAAAATTCAG 100430 Query 140166 TCCCAATGGGACATCACATGATCTTTGGTATGAAGTTAAATATA----ATGTGCTATTAA 140221 ||||| || |||||||| | ||| || || || | ||| | || | | | ||| Sbjct 100429 TCCCAGCGGTACATCACAGCTACGTTGATAAGACGTCAGATACAGCTTATCTCCCAGTAA 100370 Query 140222 -CTAAAGAAAAATTATGTGTATGCATACATGGACGCAAACATCCTAAGTCAAATTCACCT 140280 |||||| |||| ||||||||||| || |||| ||| || | ||||| ||||| Sbjct 100369 ACTAAAGG-----TATGGGTATGCATACAGGGCCGCAGACAACCAAGTTCAAACTCACCA 100315 Query 140281 GGGTTCCAGAAAGTAATAATTTCTCCACGGTCATCAATACCTTGGCTTAAATTATCATAT 140340 ||||| | || || | || || |||| || || || || | ||| | || Sbjct 100314 GGGTTATAAAAGGTCAGGATCTCGGCACGATCGTCGATCCCCTTGCTCAGGTTGCTGACG 100255 Query 140341 ACTTTTCTTAGTTGGTCTACA---GAACCA---------TTCCAAGAACGTCCTTGGACA 140388 | |||| ||||| |||| | || ||| | |||| || ||||| ||| Sbjct 100254 ATTTTTGCCAGTTGATCTAAAGTTGAGCCATCGGGCTTCTGCCAACGCCGGCCTTGCACA 100195 Query 140389 CCGTAAACACGACCCATATCATCGGGTCCTTTACGATTAGGATTATTTAACCATGATTCG 140448 || || || || ||||||||||| || ||||||| || |||| |||||| | | Sbjct 100194 CCATATACCCGGCCCATATCATCTTCACCCTTACGATGCGGGTTATCTAACCAGGCCTGA 100135 Query 140449 TTNNNNNNNNNNNNNNNNNNCCATGTATTACACCCAATCTCACGAAATTGTGCAGCACTT 140508 || ||| |||||||| || || |||| |||||||| ||||| Sbjct 100134 TTTTCGTTGGCATTCGCATTCCAGGTATTACAACCGATAGCACGGAATTGTGCGGCACTG 100075 Query 140509 GAATACCCACGAAGATATCCTAGCAGTTCAGCAATAGCAGCTTTATAAAAACTTTTACGT 140568 ||| || | | ||||||| || ||||||||| || ||||| ||| ||||||||||| Sbjct 100074 TCATAACCCCTTAAGTATCCTAACAATTCAGCAATCGCTGCTTTGTAATAACTTTTACGT 100015 Query 140569 GTAGT 140573 || || Sbjct 100014 GTCGT 100010 >seq23 Length=559261 Score = 131 bits (144), Expect = 2e-25 Identities = 215/301 (71%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 129153 ATTTTTGAATCCAACAGCCATAGGTAATCCTGAAGCAATTTCACGATGGGTCTGTGATTC 129212 |||||| || ||||||| || |||||| |||| ||||||||||| || || ||| Sbjct 518048 ATTTTTAAAGCCAACAGGTGAAGATAATCCCGAAGACATTTCACGATGTGTTTGACTTTC 517989 Query 129213 TGTAGTACGAGCACCAATAGCGACCCAACTAA--AAATACCTGATAGATACTTAATAGTA 129270 ||| |||||||| ||||| || |||| || |||| | || ||| |||| | | | Sbjct 517988 TGTTGTACGAGCGCCAATCGCTGACCAAGAAATTAAAT-CTTGGTAG-TACTGAGGTG-A 517932 Query 129271 AATGGGTCCAAGACCT-CTGTCGCCAAAGGAAGTCCAAGATTCAAT-AGTTCTAAACAGA 129328 | || |||| || | || || |||| | || |||| | | ||||| | | Sbjct 517931 GTTAGGATCAAGTGCTTCAGTTGCACAAGGCAAACCTTT-TTCATTTAATTCTAGTAAAA 517873 Query 129329 GATGGCGGGCAATTCTTAACCCTTCATCAATATTAAAAGAACCATTTAATTCTGGGTCGT 129388 || || |||| |||||||| |||||||| ||||| |||| | || ||||| | Sbjct 517872 GACCACGACCAATATGTAACCCTTTTTCAATATTGAAAGAGTCATTCATATCAGGGTCAT 517813 Query 129389 TGACTAGGCCTTTCCAACCTACAGTTGTGCGTGGTTTTTCAAAATAAACCCGCATAACCA 129448 | | || |||||||||||||| ||||| |||||||||||||||||||| |||||||| | Sbjct 517812 TAATTAAACCTTTCCAACCTACTGTTGTACGTGGTTTTTCAAAATAAACACGCATAACTA 517753 Query 129449 A 129449 | Sbjct 517752 A 517752 >seq7 Length=747525 Score = 86.0 bits (94), Expect = 6e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 64857 AAATGGTACACACTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTA 64916 |||||| | | | | ||||||||||||| ||||| | ||||||||||| | |||||||| Sbjct 439839 AAATGGCGCGCCCGATAGGATTCGAACCTATGACCCACGGCTTAGAAGGCCGTTGCTCTA 439898 Query 64917 TCCAACTGAGCTAAGTGTGCATTAT 64941 ||||||||||||| | | |||| || Sbjct 439899 TCCAACTGAGCTACGGGCGCATAAT 439923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517069238401440